1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCACCTGTACATTTCTGCGTGGAGCGTCGTGCTAAATCGATTGTCCGAAGCTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAGgtgtgacgttgatacatctcaagtcatttcctttcagtgttctaagatgttttacgtgcatgctagtgtaatacagcataactacggtcaacgttgacagtacaaggtggtggtttgtattccctgtactgttaggttagatttttttaagatctagaagtcattcttcatctgatcctttgatcatttactcaacag
species | Physcomitrella patens |
transcript | PP1S395_51V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAG CTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTGEST: gi|208392516|gb|DC933930.1|DC933930
genomic: CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAGgtgtgacgtt ... tactcaacagCTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG
EST: CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAG CTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTGEST: gi|208392081|gb|DC941929.1|DC941929
genomic: CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAGgtgtgacgtt ... tactcaacagCTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG
EST: CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAG CTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTGEST: gi|18366626|gb|BJ198705.1|BJ198705
genomic: CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAGgtgtgacgtt ... tactcaacagCTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG
EST: CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAG CTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG
genomic: CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAGgtgtgacgtt ... tactcaacagCTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACCTGTACATTTCTGCGTGGAGCGTCGTGCTAAATCGATTGTCCGAAGCTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAGgtgtgacgttgatacatctcaagtcatttcctttcagtgttctaagatgttttacgtgcatgctagtgtaatacagcataactacggtcaacgttgacagtacaaggtggtggtttgtattccctgtactgttaggttagatttttttaagatctagaagtcattcttcatctgatcctttgatcatttactcaacag
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