1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTACGGTTTCTGTTATTCGGGTCCGTTTGGACATTATTTCCACAAGTTTATGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtttgcacagcttgaaaatatcataatgttgtacaacatttttttttctaaaagactaaagttctcaatattctgtgctaagaagcctcctga...
species | Physcomitrella patens |
transcript | PP1S391_7V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|208375133|gb|DC956473.1|DC956473
genomic: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|162213711|gb|FC390326.1|FC390326
genomic: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|18344907|gb|BJ176948.1|BJ176948
genomic: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|37853276|gb|BJ611284.1|BJ611284
genomic: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|162213710|gb|FC390325.1|FC390325
genomic: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|18359874|gb|BJ191935.1|BJ191935
genomic: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|67694778|gb|BJ955011.1|BJ955011
genomic: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|67695494|gb|BJ955727.1|BJ955727
genomic: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|162262139|gb|FC437908.1|FC437908
genomic: TCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: CAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|67572127|gb|BJ944951.1|BJ944951
genomic: CAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|162159565|gb|FC335743.1|FC335743
genomic: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|162159564|gb|FC335742.1|FC335742
genomic: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|67571446|gb|BJ944270.1|BJ944270
genomic: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATTEST: gi|37834573|gb|BJ592585.1|BJ592585
genomic: TGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
EST: TTCAGCTCGCGACAGCAAGACGATAGTCAGCAAG GTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
genomic: TTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtt ... gcgaggtcagGTGATTGTGGAGCAGTTGACATCTGGCCCGTGGAATAATTTTATTTTTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACGGTTTCTGTTATTCGGGTCCGTTTGGACATTATTTCCACAAGTTTATGGAGAAACTCATTCCTTCAGCTCGCGACAGCAAGACGATAGTCAGCAAGgtgagtagtttgcacagcttgaaaatatcataatgttgtacaacatttttttttctaaaagactaaagttctcaatattctgtgctaagaagcctcctga
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG