1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGGGATAGTAGGGAAGCGTACCTTCCGCCGAAGCAGTCCTTACAAGGTCTTTAACCCGCGAGAGGGCAACGGGTATGGCCCGCGATCGGGGCCTTCCAGgtgatgcatttactttcgcgctgcctcaacttcgtccctttgtgcaaagccgcaagcatgaggctttttcgaggatacgttttggacttctggaaatctt...
species | Physcomitrella patens |
transcript | PP1S391_72V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCAACGGGTATGGCCCGCGATCGGGGCCTTCCAG GGGTGCAGCTTCAGAATTGTGTAACAACTGCAGGCGCACAGGGCACTTTGCEST: gi|162152368|gb|FC328555.1|FC328555
genomic: GGCAACGGGTATGGCCCGCGATCGGGGCCTTCCAGgtgatgcatt ... ttttggacagGGGTGCAGCTTCAGAATTGTGTAACAACTGCAGGCGCACAGGGCACTTTGC
EST: TTTAACCCGCGAGAGGGCAACGGGTATGGCCCGCGATCGGGGCCTTCCAG GGGTGCAGCTTCAGAATTGTGTAACAACTGCAGGCGCACAGGGCACTTTGCEST: gi|100396758|gb|BY953812.1|BY953812
genomic: TTTAACCCGCGAGAGGGCAACGGGTATGGCCCGCGATCGGGGCCTTCCAGgtgatgcatt ... ttttggacagGGGTGCAGCTTCAGAATTGTGTAACAACTGCAGGCGCACAGGGCACTTTGC
EST: TTTAACCCGCGAGAGGGCAACGGGTATGGCCCGCGATCGGGGCCTTCCAG GGGTGCAGCTTCAGAATTGTGTAACAACTGCAGGCGCACAGGGCACTTTGC
genomic: TTTAACCCGCGAGAGGGCAACGGGTATGGCCCGCGATCGGGGCCTTCCAGgtgatgcatt ... ttttggacagGGGTGCAGCTTCAGAATTGTGTAACAACTGCAGGCGCACAGGGCACTTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGATAGTAGGGAAGCGTACCTTCCGCCGAAGCAGTCCTTACAAGGTCTTTAACCCGCGAGAGGGCAACGGGTATGGCCCGCGATCGGGGCCTTCCAGgtgatgcatttactttcgcgctgcctcaacttcgtccctttgtgcaaagccgcaagcatgaggctttttcgaggatacgttttggacttctggaaatctt
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