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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACTCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAGgtacgttttattgtagcttgagcaaacgttttcgtatcggcatggtcgttttgtgaagactctgggaattttggctgttcgatgtagttgcgtacattaattgatactattgtccttttggctacattgcag

Basic information

species Physcomitrella patens
transcript PP1S38_328V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162152196|gb|FC328175.1|FC328175
EST:     AGACCCACTCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAG                         CTAGTTCTGTTGGGTGACTCGGGAGTGGGAAAGAGTTGCATTGTCTTACGG
genomic: AGACCCACTCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAGgtacgtttta ... tacattgcagCTAGTTCTGTTGGGTGACTCGGGAGTGGGAAAGAGTTGCATTGTCTTACGG
EST: gi|208397759|gb|DC911996.1|DC911996
EST:     AGACCCACTCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAG                         CTAGTTCTGTTGGGTGACTCGGGAGTGGGAAAGAGTTGCATTGTCTTACGG
genomic: AGACCCACTCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAGgtacgtttta ... tacattgcagCTAGTTCTGTTGGGTGACTCGGGAGTGGGAAAGAGTTGCATTGTCTTACGG
EST: gi|162267081|gb|FC443312.1|FC443312
EST:     AGACCCACTCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAG                         CTAGTTCTGTTGGGTGACTCGGGAGTGGGAAAGAGTTGCATTGTCTTACGG
genomic: AGACCCACTCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAGgtacgtttta ... tacattgcagCTAGTTCTGTTGGGTGACTCGGGAGTGGGAAAGAGTTGCATTGTCTTACGG
EST: gi|100370853|gb|BY948549.1|BY948549
EST:     AGACCCACCCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAG                         CTAGTTCTGTTGGGTGACTCGGGAGTGGGANAGAGTTGCATTGTCTTACGG
genomic: AGACCCACTCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAGgtacgtttta ... tacattgcagCTAGTTCTGTTGGGTGACTCGGGAGTGGGAAAGAGTTGCATTGTCTTACGG
EST: gi|100440896|gb|BY962384.1|BY962384
EST:     AGACCCACTCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAG                         CTAGTTCTGTTGGGTGACTCGGGAGTGGGAAAGAGTTGCATTGTCTTACGG
genomic: AGACCCACTCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAGgtacgtttta ... tacattgcagCTAGTTCTGTTGGGTGACTCGGGAGTGGGAAAGAGTTGCATTGTCTTACGG