1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTACGACATGTTGCGCAGGAACGCACTGCGCGCGGACTCCATCAAGTGCTTTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgttcggtgttggagcagggggattgcatcacgcagggatgggcgtctttcaagtctgtttgtgcctctgttttgagccagtctggaatgaggg...
species | Physcomitrella patens |
transcript | PP1S383_1V6.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|100387935|gb|BY970680.1|BY970680
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|162189204|gb|FC366726.1|FC366726
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|100396855|gb|BY953861.1|BY953861
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGGTTTA-GGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCGAGTGGGTGTTTTCEST: gi|162186231|gb|FC362163.1|FC362163
genomic: TGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGG-TTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|162195203|gb|FC371426.1|FC371426
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|162155800|gb|FC331829.1|FC331829
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|162211807|gb|FC387471.1|FC387471
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|162163659|gb|FC339764.1|FC339764
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|162263015|gb|FC439330.1|FC439330
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|208348012|gb|DC905335.1|DC905335
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGANGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCC-AGAN-CTTCAAGTGGGTGTTT-CEST: gi|162267873|gb|FC444474.1|FC444474
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|100445358|gb|BY982987.1|BY982987
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|162180442|gb|FC355863.1|FC355863
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|208362032|gb|DC950481.1|DC950481
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TGTGCTGGATGAGGCCGATGAGATGCTTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|162189433|gb|FC365447.1|FC365447
genomic: TGTGCTGGATGAGGCCGATGAGATGC-TTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTCEST: gi|162162744|gb|FC337798.1|FC337798
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
EST: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAG ATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
genomic: TTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgtt ... atacgtgcagATTTACGACATCTTTCAGCTGCTGCCCCAGAAGCTTCAAGTGGGTGTTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGACATGTTGCGCAGGAACGCACTGCGCGCGGACTCCATCAAGTGCTTTGTGCTGGATGAGGCCGATGAGATGCTTTCTCGGGGGTTTAAGGATCAGgtattccgttcggtgttggagcagggggattgcatcacgcagggatgggcgtctttcaagtctgtttgtgcctctgttttgagccagtctggaatgaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG