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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCGACCATTCAACTGGATTGGCCCACGCATGGATTTCATACCAGGCATTGACGGACCAAGTGACTCAATTCCTCGTGTCCTGGCATGCTTCAGCAATgtaattcgccagcacttctttggcgcttcctcttcctgcttgcccatctgttttatttttaattatttttatttcaatttctcatttccgatcaaaattatgattggtgtggaggttatccacttgatctgatggcaaaaactgcag

Basic information

species Physcomitrella patens
transcript PP1S379_19V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S379_19V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA17G05440.1 (Glycine max), 5'ss of exon 3
AGTTCGACCATTCAACTGGATTGGCCCACGCATGGATTTCATACCAGGCATTGACGGACCAAGTGACTCAATTCCTCGTGTCCTGGCATGCTTCAGCAATgtaattcgccagcacttctttggcgcttcctcttcctgcttgcccatctgttttatttttaattatttttatttcaatttctcatttccgatcaaaattatgattggtgtggaggttatccacttgatctgatggcaaaaactgcag
 ||  |||| || || |||||||| ||||| ||||||||||| || |||||||| || ||||||||     ||||||| || ||||||||||| |||||||| | |   ||       || | |      | ||   |||||   || | | || ||  | | ||||||||  | |   |   |  |    ||   ||| |  ||  ||| |                                   
TGTGAGACCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagtttacattttgatttagac----tttgtttaagcttgtatatat-tgttgttagtcaatatttttaaataatgattctaaatattttcttcatt-tcttttctgtag-----------------------------------

upper sequence: PP1S379_19V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA12G30490.2 (Glycine max), 5'ss of exon 5
AGTTCGACCATTCAACTGGATTGGCCCACGCATGGATTTCATACCAGGCATTGACGGACCAAGTGACTCAATTCCTCGTGTCCTGGCATGCTTCAGCAATgtaattcgccagcacttctttggcgcttcctcttcctgcttgcccatctgttttatttttaattatttttatttcaatttctcatttccgatcaaaattatgattggtgtggaggttatccacttgatctgatggcaaaaactgcag
 ||  | || || || |||||||| ||||| ||||||||||| || |||||||| || ||||||||     ||||||| || ||||||||||| |||||||| | |   ||       || | |  |   |   | ||  |     | |  |  || |||    ||  | |||  || |  |   | |    |     | |                                              
TGTGAGGCCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGCCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagtttacattttgatttagactttgtttaagcttgtatatatgt-tactcgatatttttggataatgattctaaatattttctccattccttttctgtag--------------------------------------------

upper sequence: PP1S379_19V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 5
AGTTCGACCATTCAACTGGATTGGCCCACGCATGGATTTCATACCAGGCATTGACGGACCAAGTGACTCAATTCCTCGTGTCCTGGCATGCTTCAGCAATgtaattcgccagcacttctttggcgcttcctcttcctgcttgcccatctgttttatttttaattatttttatttcaatttctcatttccgatcaaaattatgattggtgtggaggttatccacttgatctgatggcaaaaactgcag
 ||  ||||||||||||||||||| ||  | ||||||||||| || |||||||| || || || ||     | || || || || || ||||| || || |||| |   |||   |  |     |       ||| |       |  | | || | ||||  || |||   |||    |    |||| |                                                          
TGTAAGACCATTCAACTGGATTGGACCTAGGATGGATTTCATCCCTGGCATTGATGGTCCTAGCGAGGGTGTCCCACGGGTTCTAGCGTGCTTTAGTAACgtaagtatacaggcttagtccaatgacctgagttcttctcatggctgcagcttaactttt--ttgtttaactttttggtgggtattttcag--------------------------------------------------------