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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctggtttttcaatctttctgattcaatcggtctgatcctcaggaattagttggactgatcataacatttaaggtttagggttttacataacctaatttttcagatgcatatgacgcaacgtttcag

Basic information

species Physcomitrella patens
transcript PP1S375_10V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S375_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM5G899149_T01 (Zea mays), 5'ss of exon 3
GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctggtttttcaatctttctgattcaatcggtctgatcctcaggaattagttggactgatcataacatttaaggtttagggttttacataacctaatttttcagatgcatatgacgcaacgtttcag
|| |||||  | |||||||| |||||  | |||||||| ||||||||||| ||  | |||||||| |||||||||||| | || |||   || | | | | |    ||  ||  | | |   | | ||  | |    |  ||||  | ||  |       |||  | |    ||  |||                                       
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCCGTGAGAGATGTGCAGGAGGCCTGTGTACATGATGgta--ctgtagatatccttatttcttgcatgatttaatttaat--ttaactgtaggttgaccagagaaattgtcctaacatgttcatttggacag--------------------------------------

upper sequence: PP1S375_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM5G899149_T02 (Zea mays), 5'ss of exon 2
---------------GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctggtttttcaatctttctgattcaatcggtctgatcctcaggaattagttggactgatcataacatttaaggtttagggttttacataacctaatttttcagatgcatatgacgcaacgtttcag
               || |||||  | |||||||| |||||  | |||||||| ||||||||||| ||  | |||||||| |||||||||||| | || |||   || | | | | |    ||  ||  | | |   | | ||  | |    |  ||||  | ||  |       |||  | |    ||  |||                                       
TTGCTGTACTTGCAGGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCCGTGAGAGATGTGCAGGAGGCCTGTGTACATGATGgta--ctgtagatatccttatttcttgcatgatttaatttaat--ttaactgtaggttgaccagagaaattgtcctaacatgttcatttggacag--------------------------------------

upper sequence: PP1S375_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctggtttttcaatctttctgattcaatcggtctgatcctcaggaattagttggactgatcataacatttaaggtttagggttttacataacctaatttttcagatgcatatgacgcaacgtttcag
|| |||||  | |||||||| |||||  | |||||||| ||||||||||||||  | || ||||| |||||||||||  | || |||      | ||  | |    |  |||  |    || |    |  | |    |||  | ||   | | |     ||||  | |    ||  |||                                       
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgta--tcatagtcgtccttattagctgcatagtccgatgatctatttataggttatctagagaaaccgtc---cttaatatcttcatttgcacag--------------------------------------

upper sequence: PP1S375_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv06s0004g07940.t01 (Vitis vinifera), 5'ss of exon 3
GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctggtttttcaat-ctttctgattcaatcggtctgatcctcaggaattagttggactgatcataacatttaaggtttagggttttacataacctaatttttcagatgcatatgacgcaacgtttcag
||||| ||  | ||| ||||| ||||  | |||||||| ||||| ||||||||||||||||||||||| || ||||| || ||  || |  |||  ||| ||||| ||||||   |   ||    | ||  | | || | |        | |  ||   ||  |  | |   |                                              
GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATAgtaa-ttcttctttatcaatactttctatcttcttcttctttatggtgatga-tgatccactgagtttgtatttttctacttgtgaag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100424755|gb|BY976799.1|BY976799
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67721336|gb|BJ971595.1|BJ971595
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|19790373|gb|BQ041838.1|BQ041838
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67718495|gb|BJ968754.1|BJ968754
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCGAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67726318|gb|BJ976577.1|BJ976577
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67704664|gb|BJ964897.1|BJ964897
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|162212775|gb|FC388575.1|FC388575
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67700337|gb|BJ960570.1|BJ960570
EST:     CGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: CGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67702651|gb|BJ962884.1|BJ962884
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|18360385|gb|BJ192447.1|BJ192447
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|162232635|gb|FC409186.1|FC409186
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67578206|gb|BJ950373.1|BJ950373
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|161982662|gb|EE296433.1|EE296433
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCCGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|162269890|gb|FC445914.1|FC445914
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67723609|gb|BJ973868.1|BJ973868
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|15327410|gb|BI488049.1|BI488049
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67726053|gb|BJ976312.1|BJ976312
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67702832|gb|BJ963065.1|BJ963065
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|162202640|gb|FC378985.1|FC378985
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67701868|gb|BJ962101.1|BJ962101
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67724549|gb|BJ974808.1|BJ974808
EST:     TGTCGAGCAGGCCGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|37837074|gb|BJ595082.1|BJ595082
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67576802|gb|BJ949626.1|BJ949626
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|162222274|gb|FC397710.1|FC397710
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67727685|gb|BJ977944.1|BJ977944
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67717538|gb|BJ967797.1|BJ967797
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67709536|gb|BJ965352.1|BJ965352
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67703524|gb|BJ963757.1|BJ963757
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67719391|gb|BJ969650.1|BJ969650
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67720355|gb|BJ970614.1|BJ970614
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|162232634|gb|FC409185.1|FC409185
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|37846250|gb|BJ604258.1|BJ604258
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|18365795|gb|BJ197873.1|BJ197873
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|37838525|gb|BJ596533.1|BJ596533
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67717812|gb|BJ968071.1|BJ968071
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|7147921|gb|AW509843.1|AW509843
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67712841|gb|BJ966290.1|BJ966290
EST:     TGTCGAGCAGGCCGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|67701073|gb|BJ961306.1|BJ961306
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|162202641|gb|FC378986.1|FC378986
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
EST: gi|18357712|gb|BJ189771.1|BJ189771
EST:     TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG                         GGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG
genomic: TGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctg ... aacgtttcagGGTATGTCCTCCCGAAGTTGTACGCCAAGATGCAGTATTGCATTTCCTGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctggtttttcaatctttctgattcaatcggtctgatcctcaggaattagttggactgatcataacatttaaggtttagggttttacataacctaatttttcagatgcatatgacgcaacgtttcag

- - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG