1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGTTCAGCACATTTTGTGTGGATGGGCGAGCGAACCCGGCAGTTAGATGGTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAGgtaacccgcttttcatttttcctcagtttgtcatttagtttttaaatttcagcttatgtgagcggttatttggcagtgatacataatccacttagatcat...
species | Physcomitrella patens |
transcript | PP1S36_31V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAG GTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTAEST: gi|162219668|gb|FC395664.1|FC395664
genomic: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAGgtaacccgct ... gattgtgtagGTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTA
EST: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAG GTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTAEST: gi|162168089|gb|FC343779.1|FC343779
genomic: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAGgtaacccgct ... gattgtgtagGTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTA
EST: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAG GTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTAEST: gi|162185170|gb|FC362304.1|FC362304
genomic: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAGgtaacccgct ... gattgtgtagGTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTA
EST: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAG GTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTAEST: gi|162248092|gb|FC420097.1|FC420097
genomic: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAGgtaacccgct ... gattgtgtagGTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTA
EST: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAG GTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTAEST: gi|162194172|gb|FC369684.1|FC369684
genomic: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAGgtaacccgct ... gattgtgtagGTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTA
EST: GCGAGGAGTTGCTAATCCTTTGGGAGTGAAG GTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTAEST: gi|67720594|gb|BJ970853.1|BJ970853
genomic: GCGAGGAGTTGCTAATCCTTTGGGAGTGAAGgtaacccgct ... gattgtgtagGTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTA
EST: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAG GTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTAEST: gi|162176951|gb|FC353628.1|FC353628
genomic: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAGgtaacccgct ... gattgtgtagGTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTA
EST: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAG GTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTAEST: gi|162160220|gb|FC337117.1|FC337117
genomic: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAGgtaacccgct ... gattgtgtagGTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTA
EST: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAG GTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTA
genomic: GTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAGgtaacccgct ... gattgtgtagGTAAGTGACAAGATGGACCCCGCAGAGTTGGTGAAGCTCTGTGAGATTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTTCAGCACATTTTGTGTGGATGGGCGAGCGAACCCGGCAGTTAGATGGTGCTCATATTGAATTTCTGCGAGGAGTTGCTAATCCTTTGGGAGTGAAGgtaacccgcttttcatttttcctcagtttgtcatttagtttttaaatttcagcttatgtgagcggttatttggcagtgatacataatccacttagatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG