1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAACCATCGGCATCGACTTTCTTTCAAAGACGATGTACCTAGAGGATCGCACTGTACGCCTACAGCTCTGgtagcttgcgtttcctttcctatatttttcgtatagtatcacgttgcttggcagacttctcttctctatattaacttttgctcttccaatcatcgtatta...
species | Physcomitrella patens |
transcript | PP1S353_41V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTTCAAAGACGATGTACCTAGAGGATCGCACTGTACGCCTACAGCTCTG GGATACTGCAGGGCAAGAAAGGTTTCGAAGTCTAATTCCTAGCTATATCCGEST: gi|162272435|gb|FC449061.1|FC449061
genomic: CTTTCAAAGACGATGTACCTAGAGGATCGCACTGTACGCCTACAGCTCTGgtagcttgcg ... actgttgtagGGATACTGCAGGGCAAGAAAGGTTTCGAAGTCTAATTCCTAGCTATATCCG
EST: CTTTC-AAGACGATGTACCTAGAGGATCGCACTGTACGCCTACAGCTCTG GGATACTGCAGGGCAAGAAAGGTTTCGAAGTCTAATTCCTAGCTATATCCGEST: gi|18329546|gb|BJ161552.1|BJ161552
genomic: CTTTCAAAGACGATGTACCTAGAGGATCGCACTGTACGCCTACAGCTCTGgtagcttgcg ... actgttgtagGGATACTGCAGGGCAAGAAAGGTTTCGAAGTCTAATTCCTAGCTATATCCG
EST: CTTTCAAAGACGATGTACCTAGAGGATCGCACTGTACGCCTACAGCTCTG GGATACTGCAGGGCAAGAAAGGTTTCGAAGTCTAATTCCTAGCTATATCCG
genomic: CTTTCAAAGACGATGTACCTAGAGGATCGCACTGTACGCCTACAGCTCTGgtagcttgcg ... actgttgtagGGATACTGCAGGGCAAGAAAGGTTTCGAAGTCTAATTCCTAGCTATATCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACCATCGGCATCGACTTTCTTTCAAAGACGATGTACCTAGAGGATCGCACTGTACGCCTACAGCTCTGgtagcttgcgtttcctttcctatatttttcgtatagtatcacgttgcttggcagacttctcttctctatattaacttttgctcttccaatcatcgtatta
- - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC