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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGATCTTCGCATATGGGCAGACCAGCAGCGGGAAGACTTTCACAATGAGGGGTGTCACCGATAGTGCTATTGCAGACATTTTTGACTACATTCAACGCgtatgtcttctactctgtttcaggataggaacgtgcccctctttgtatttagttacattctatgaatgtcaacgaaatcggcatatttttcttattgact...

Basic information

species Physcomitrella patens
transcript PP1S343_28V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S343_28V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA13G17440.1 (Glycine max), 5'ss of exon 3
TACGATCTTCGCATATGGGCAGACCAGCAGCGGGAAGACTTTCACAATGAGGGGTGTCACCGATAGTGCTATTGCAGACATTTTTGACTACATTCAACGCgtatgtcttctactctgtttcaggataggaacgtgcccctctttgtat-ttagttacattcta-tgaatgtcaacgaaatcggcatatttttcttattgact-------------------------------------------------------------------------------------
 || || || || ||||||||||| ||||| || ||||| ||||| ||||| || ||||| || |||||||||  |||||| |  ||||||||| |    ||  || | ||| | |  |      | |  || | ||   |||| ||| | | |||  ||||| ||| | | ||  | |  |  ||   |   ||     ||                                                                                     
AACAATATTTGCGTATGGGCAGACTAGCAGTGGTAAGACATTCACGATGAGAGGCGTCACTGAAAGTGCTATTAAAGACATCTACGACTACATTAAGAATgtgagt-tactagtttact-----gttgatacctaccaaactttatatgtcaattatcttctactgagtataaagtagaaggctattcatgagttgaatcctattagtatttatcaagattaattgcaggatttgatggcaattacttgcaattatgaacattttttattcgtttcaatttccacag

upper sequence: PP1S343_28V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv17s0000g03290.t01 (Vitis vinifera), 5'ss of exon 3
TACGATCTTCGCATATGGGCAGACCAGCAGCGGGAAGACTTTCACAATGAGGGGTGTCACCGATAGTGCTATTGCAGACATTTTTGACTACATTCAACGCgtatgtcttctactctgtttcaggataggaacgtgcccctctttgtatttagttacattctatgaatgtcaacgaaatcggcatatttttcttattgact----
 || || || ||||||||||| |||||||| |||||||||| ||||||||| ||  | || || |  ||| ||   || || | | |  | ||   |   ||| |  || |   |||   |  ||    |   ||||      |  | || |||        || ||||  ||  |    | ||| | | |  |   ||     
AACTATATTTGCATATGGGCAAACCAGCAGTGGGAAGACTTACACAATGAGAGGAATAACAGAGAAAGCTGTTAATGATATCTATAAGCATATAATAAATgtaagctttat---ctgaacctagaattaattttgccaagtaattcagttggttgtcagtgttggatgtagacttagattg-atagtctacacagaaacaactc