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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCCTTTCTGATGGATGATCCCCACGTGGGACTACTGTTCCCCGCTGACGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatcaatctctcttcttcaagcttggaaaagctacaaatctctgttaaaattgaaagagctgttttgataccattaaactacaacaaggaagtt...

Basic information

species Physcomitrella patens
transcript PP1S341_73V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100386514|gb|BY951310.1|BY951310
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|100406162|gb|BY991570.1|BY991570
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|162185274|gb|FC361784.1|FC361784
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|162173953|gb|FC349753.1|FC349753
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|162187116|gb|FC362898.1|FC362898
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|162158810|gb|FC335333.1|FC335333
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|100435045|gb|BY979058.1|BY979058
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|100446505|gb|CJ970804.1|CJ970804
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|162165683|gb|FC342250.1|FC342250
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|162193527|gb|FC370430.1|FC370430
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|100389902|gb|BY971254.1|BY971254
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|162171492|gb|FC346767.1|FC346767
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|18329867|gb|BJ161873.1|BJ161873
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCC
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCC
EST: gi|18326623|gb|BJ158622.1|BJ158622
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTC
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTC
EST: gi|162151892|gb|FC328138.1|FC328138
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|18363059|gb|BJ195131.1|BJ195131
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGA
EST: gi|67568954|gb|BJ941778.1|BJ941778
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
EST: gi|162157215|gb|FC332849.1|FC332849
EST:     CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGG                         GAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA
genomic: CGCCATTGCCAAAGCCAAGCATTATTTATCTATGACCTCAGGGGGCGTGGgtacgtcatc ... tcttgaacagGAGCTTACAGTGATTCCAGAGGACTTCCGGGGGTGCGGCAGGAGGTTGCAA