1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGGTCCGGACCGGAACGTACCGGCAGCTGTTTCACCCGGAGCAGCTGATTTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagccgttggtcattgccgtggtcattccgctgtagtgtaggtggtttgttgcgtgagtgagtgttgatgtggatgaatgaggggcggcatgccg...
species | Physcomitrella patens |
transcript | PP1S341_23V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|162167933|gb|FC344871.1|FC344871
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|18358529|gb|BJ190588.1|BJ190588
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|100420027|gb|BY975938.1|BY975938
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|162187183|gb|FC363693.1|FC363693
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|162153183|gb|FC329589.1|FC329589
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|162197748|gb|FC374998.1|FC374998
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|162229157|gb|FC404516.1|FC404516
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|162186501|gb|FC363265.1|FC363265
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|162159253|gb|FC335106.1|FC335106
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|162174343|gb|FC350414.1|FC350414
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|18366573|gb|BJ198652.1|BJ198652
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|162162283|gb|FC338065.1|FC338065
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAGEST: gi|162195647|gb|FC370310.1|FC370310
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
EST: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTG TGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
genomic: TTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagcc ... tgttttgcagTGGGGAAGGAGATTGTGGATCTGTGCCTGGACAGGGTGAGGAAGCTGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGTCCGGACCGGAACGTACCGGCAGCTGTTTCACCCGGAGCAGCTGATTTCGGGGAAGGAGGACGCTGCAAACAACTTCGCTCGCGGCCATTATACTGgtgcgaagccgttggtcattgccgtggtcattccgctgtagtgtaggtggtttgttgcgtgagtgagtgttgatgtggatgaatgaggggcggcatgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA