1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATCTCGATTCCTTTCTTCACTGATACATGGCGACCCGATAGCTTCTATGATAAAATCGAAGCAAATCGGAAAATCGGGTTGCACACATTATGTCTCTTAGgtatgtttccacacacttcaccgtaagagctgtaaacatgagctgttttgtttgcttaagtttatgtcattcaaagttgtctttatttccgtattcaaaa...
species | Physcomitrella patens |
transcript | PP1S340_38V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAAAATCGAAGCAAATCGGAAAATCGGGTTGCACACATTATGTCTCTTAG ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAGEST: gi|67691703|gb|BJ951936.1|BJ951936
genomic: TAAAATCGAAGCAAATCGGAAAATCGGGTTGCACACATTATGTCTCTTAGgtatgtttcc ... tacattacagACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAG
EST: TAAAATCGAAGCAAATCGGAAAATCGGGTTGCACACATTATGTCTCTTAG ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAGEST: gi|67508482|gb|BJ941348.1|BJ941348
genomic: TAAAATCGAAGCAAATCGGAAAATCGGGTTGCACACATTATGTCTCTTAGgtatgtttcc ... tacattacagACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAG
EST: TAAAATCGAAGCAAATCGGAAAATCGGGTTGCACACATTATGTCTCTTAG ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAGEST: gi|67695048|gb|BJ955281.1|BJ955281
genomic: TAAAATCGAAGCAAATCGGAAAATCGGGTTGCACACATTATGTCTCTTAGgtatgtttcc ... tacattacagACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAG
EST: TAAAATCGAAGCAAATCGGAAAATCGGGTTGCACACATTATGTCTCTTAG ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAGEST: gi|162217820|gb|FC394120.1|FC394120
genomic: TAAAATCGAAGCAAATCGGAAAATCGGGTTGCACACATTATGTCTCTTAGgtatgtttcc ... tacattacagACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAG
EST: TAAAATCGAAGCAAATCGGAAAATCGGGTTGCACACATTATGTCTCTTAG ACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAG
genomic: TAAAATCGAAGCAAATCGGAAAATCGGGTTGCACACATTATGTCTCTTAGgtatgtttcc ... tacattacagACATCCGAGTGAAGGAGCAATCAGTTGAAGCTTTGTGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTCGATTCCTTTCTTCACTGATACATGGCGACCCGATAGCTTCTATGATAAAATCGAAGCAAATCGGAAAATCGGGTTGCACACATTATGTCTCTTAGgtatgtttccacacacttcaccgtaagagctgtaaacatgagctgttttgtttgcttaagtttatgtcattcaaagttgtctttatttccgtattcaaaa
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