1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGGgtaaggttcaattttcctatctcgagtgcatattaggtcacttaatgcagtgatgtttttatattgtttagaaatgtctcaagtagctttatttcatcctcggatataatttttgtgttcagatagtgtctacttacaccatacatgcggcattatcactccagactgaacattgacttttatttttataacag
species | Physcomitrella patens |
transcript | PP1S33_22V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGG CCATTGTGGGTGACATTACGCCCAATGACAATGTTCNTAAAGAAGAGAAGAEST: gi|208395117|gb|DC923916.1|DC923916
genomic: GTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGGgtaaggttca ... tttataacagCCATTGTGGGTGACATTACGCCCAATGACAATGTTCCTAAAGAAGAGAAGA
EST: GTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGG CCATTGTGGGTGACATTACGCCCAATGACAATGTTCCTAAAGAAGAGAAGAEST: gi|37851610|gb|BJ609618.1|BJ609618
genomic: GTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGGgtaaggttca ... tttataacagCCATTGTGGGTGACATTACGCCCAATGACAATGTTCCTAAAGAAGAGAAGA
EST: GTAAAGATGGCCGTGGTGCATGACATTGCCGAGG CCATTGTGGGTGACATTACGCCCAATGACAATGTTCCTAAAGAAGAGAAGAEST: gi|208368094|gb|DC947654.1|DC947654
genomic: GTAAAGATGGCCGTGGTGCATGACATTGCCGAGGgtaaggttca ... tttataacagCCATTGTGGGTGACATTACGCCCAATGACAATGTTCCTAAAGAAGAGAAGA
EST: GTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGG CCATTGTGGGTGACATTACGCCCAATGACAATGTTCCTAAAGAAGAGAAGA
genomic: GTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGGgtaaggttca ... tttataacagCCATTGTGGGTGACATTACGCCCAATGACAATGTTCCTAAAGAAGAGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGGgtaaggttcaattttcctatctcgagtgcatattaggtcacttaatgcagtgatgtttttatattgtttagaaatgtctcaagtagctttatttcatcctcggatataatttttgtgttcagatagtgtctacttacaccatacatgcggcattatcactccagactgaacattgacttttatttttataacag
- - - AAGATG