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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATACTTTGTGGATGATGACGATTTTGTTGCGAAGGATgtaagtgtgaactactacttcgattctctgtttcctatgccttttgaatttggttgggatatcagccattcaaatatttgttcatctcattttttgaatt...

Basic information

species Physcomitrella patens
transcript PP1S327_30V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100396736|gb|BY953801.1|BY953801
EST:     GAAATACTTTGTGGATGATGACGATTTTGTTGCGAAGGAT                         ATAGTAGTGAACATGGAAAACGTTGGGTCTGGCTTACACTTCAGACGTGCT
genomic: GAAATACTTTGTGGATGATGACGATTTTGTTGCGAAGGATgtaagtgtga ... aatacaacagATAGTAGTGAACATGGAAAACGTTGGGTCTGGCTTACACTTCAGACGTGCT
EST: gi|162261187|gb|FC437204.1|FC437204
EST:     GAAATACCTTGTGGATGATGACGATTTTGTTGCGAAGGAT                         ATAGTAGTGAACATGGAAAACGTTGGGTCTGGCTTACACTTCAGACGTGCT
genomic: GAAATACTTTGTGGATGATGACGATTTTGTTGCGAAGGATgtaagtgtga ... aatacaacagATAGTAGTGAACATGGAAAACGTTGGGTCTGGCTTACACTTCAGACGTGCT