Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgcttctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag

Basic information

species Physcomitrella patens
transcript PP1S31_178V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtt-tgtgctt-----ctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaat-gtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
| ||| | ||||| |||||||||||||||||||| || ||||| ||||| || || ||||| || || ||||||||||| || || || || ||  | |||||  |  |||     |||||    | | ||  |   |||  |||   || |       | | | ||  | || | |||   | | |   |||    | ||                                          
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcaca-acactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg------------------------------------------

upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA10G26790.1 (Glycine max), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgcttctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattg-aatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
| ||  | || ||||| ||||| |||||  | ||||| ||||||||||| || ||||||||||||||||||||||| || || || || ||||| ||||||| | |  |  |        | || ||   ||    |  |||  || ||  |  |     | ||||  ||  |||  | ||| |    |||| | | ||||  | |                               
TCGAACTTTATGCTGAAAAGGTCAACAATAGGGGTCTTTGCGCTATTGCTCAGGCTGAGTCTCTTCGATACAAGCTCCTTGGTGGACTCGCTGTGCGCAGgtgtatattcattt------tttagttgataaaaatatgtaatctttttttaaaattgtttcattgcgattcatg--tcgttgtgaaaaaat-gtagaaaattgctgtc----------------------------

upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA10G26890.1 (Glycine max), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgcttctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
| ||  | || ||||| ||||| |||||  | ||||| ||||||||||| || |||||||||||||| |||||||| || || || || ||||| ||||||| | |  |  |        | || ||   ||    |  ||| ||| ||   |||||| ||        |  | |  |  ||  |  ||| || | ||||  | |                               
TTGAACTTTATGCTGAAAAGGTCAACAATAGGGGTCTTTGCGCTATTGCTCAGGCTGAGTCTCTTCGCTACAAGCTCCTTGGTGGACTCGCTGTGCGCAGgtgtatattcattt------tttagttgataaaaatatgtaattttttt---ttaaattgtttcattgcgattcatgtcgttgtgaaaaactgtagaaaattgctgtcg---------------------------

upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA16G33230.1 (Glycine max), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgt--ttgtgcttctacacaaa---atatacttttaaatggcaattaaatttatt--caattaaatggtaattgaatgtatgaattg-ttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
| ||| | || ||||||||||| |||||| | || ||||| || ||||| || || ||||| ||||| |||||||||||||| || || || || |||||||  || |  | ||   ||||   ||  | || || |    |  | ||| | ||   |  | |||   |  ||    || | || | |||||     |||                                            
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCCTGTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTTCTCGGTGGCCTCGCCGTTCGCAGgtaattatattactctgcaaattcattcatttgtataatatatcttaatatcttgatatcttaatttcagatgtcattaggcatgggttttaattttatt--------------------------------------------

upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttg---tgcttctacac-aaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
| ||| | || ||||||||||| |||||| | || || || || ||||| || || ||||| ||||| |||||||||||||| || || ||||| ||||||| |    || | ||   | ||   || ||| ||  | |  ||   ||||||   ||||       |||  | || | | || ||         |||   |                                       
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCCTCTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTTCTCGGTGGCCTCGCTGTTCGCAGgtataacatgttactctgctaatgcattcttctagtttgtgatgtgatttatc--attaggcaaggattttaggttt-agttattacgaatttgttgattact-------------------------------------

upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT2G31610.1 (Arabidopsis thaliana), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgcttctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
| ||| | || ||||||||||| |||||| | ||||| || || ||||| || ||||||||||| || |||||||||||||| ||||||||||| |||||||  |   ||   |    | |||  ||||   |    |||    |   ||||||     ||  || | ||| |   ||  ||   || ||| |  |||     |   || ||                        
TTGAGCTCTATGCTGAGAAGGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTACGTTACAAGCTTCTCGGTGGTCTTGCTGTTCGCAGgtacgacatttctct---agtatgtttttgtgt----att---ctctctcaattg--ctgttgtt-attgtttagcttacttggtcctaatagtgaaatgtataggatacaac-----------------------

upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttg---tgcttctac-acaaaatatacttttaaatggcaattaaattt--attcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
| ||| | || |||||||||||    ||| | ||||| || |||||||| || |||||||||||||| ||||||||||| || ||||||||||| || |||| ||   || |||||   |   ||    || ||  |  || |    | |  |||   |  | || |  || |   | ||  ||  | |||  || |                                             
TTGAGCTTTATGCTGAGAAGGTTGCTAACAGAGGTCTTTGTGCTATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGTAGgtatgacgtgtttctattgctgcatccttttgtagctatcattccggtgttgatttgttagattgatgcttaagactgtgtgttaatgtagtgaagtatc------------------------------------------

upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv09s0002g01460.t01 (Vitis vinifera), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt-ctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
||||| | || |||||||| || |||||| | ||||| || || ||||| || |||||||| || || ||||||||||| ||||| |||||||| |||||||  ||     |    | || | || | | | ||    || | |     |   ||||||||| || |||| ||    ||||  ||  |  ||      ||                                     
TGGAGCTTTATGCTGAGAAAGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCACTACGTTACAAGCTTCTTGGAGGGCTTGCTGTTCGCAGgtgggtatcaacgtttccaattttattgtcatattttcataatacagtgtatcttaaatggttatggaatttacagtttgtagtatgctgatatatttaa-------------------------------------

upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EDP07493 (Chlamydomonas reinhardtii), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgcttctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
| ||| |||||||||||||||| | | |||||||||||||||| || || || || ||||| || || |||||||| || || || || || || ||| |||  | ||  || |    |       ||    | ||  |  |        |   ||| || |   ||  |   |||  |||   |       || |      || ||   |                         
TTGAGCTGTACGCTGAGAAGGTCAGCGACCGTGGTCTGTGCGCCATCGCCCAGGCCGAGTCGCTGCGCTACAAGCTGCTGGGTGGCCTGGCCGTGCGCCGgt--gagcagctgcgaggagagggtgttggggttgcggtgtag-------agggaaacggcag--gaccgc--gaagcgttgggggtggcaagggagggcacgaaaccgcatt-----------------------

upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ34676 (Selaginella moellendorffii), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgcttctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
||||| |||| || |||||||||||||||||||| || ||||| || || ||||| |||||| | ||||||||||| || ||||| || || || || |||||||   ||     |    |   | |     |||   | |                                                                                               
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttcttttttggcct-----tggtgctcag----------------------------------------------------------------------------------------------

upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ31296 (Selaginella moellendorffii), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgcttctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
||||| |||| || |||||||||||||||||||| || ||||| || || ||||| |||||| | ||||||||||| || ||||| || || || || |||||||   ||     |    |   | |     |||   | | | || |  | ||     |                                                                            
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttcttttttggcct-----tggtgctaagagttctctacttcgtcag----------------------------------------------------------------------------

upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ34304 (Selaginella moellendorffii), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgcttctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
||||| |||| || |||||||||||||||||||| || ||||| || || ||||| |||||| | ||||||||||| || ||||| || || || || |||||||   ||     |    |   | |     |||   | | | || |  | ||     |                                                                            
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttcttttttggcct-----tggtgctaagagttctctactttgtcag----------------------------------------------------------------------------

upper sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ31038 (Selaginella moellendorffii), 5'ss of exon 3
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgcttctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag
||||| |||| || |||||||||||||||||||| || ||||| || || ||||| |||||| | ||||||||||| || ||||| || || || || |||||||   ||     |    |   | |     |||   | | | || |  | ||     |                                                                            
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttcttttttggcct-----tggtgctaagacttctctacttcgtcag----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162232978|gb|FC407566.1|FC407566
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCTAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162278299|gb|FC454177.1|FC454177
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18328342|gb|BJ160346.1|BJ160346
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18336578|gb|BJ168600.1|BJ168600
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18372625|gb|BJ204227.1|BJ204227
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162208528|gb|FC384491.1|FC384491
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCTAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162265194|gb|FC441281.1|FC441281
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|67727225|gb|BJ977484.1|BJ977484
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162265193|gb|FC441280.1|FC441280
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162232977|gb|FC407565.1|FC407565
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCTAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|37843467|gb|BJ601475.1|BJ601475
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18359275|gb|BJ191335.1|BJ191335
EST:     AAGCTGAGTCTCTTCGATACAAGCTTCTTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTT
genomic: AAGCTGAGTCTCTTCGATACAAGCTTCT-CGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCT-GAGGTTCATCATGGAGAGCGGTGCCAAGGGTT
EST: gi|67718871|gb|BJ969130.1|BJ969130
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162277242|gb|FC453672.1|FC453672
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18349896|gb|BJ181947.1|BJ181947
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAN                         GGCTTGCTATGGAAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTT
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGA-GTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTT
EST: gi|162259149|gb|FC435195.1|FC435195
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162259148|gb|FC435194.1|FC435194
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|19787833|gb|BQ040676.1|BQ040676
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162206671|gb|FC382429.1|FC382429
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCTAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162208527|gb|FC384490.1|FC384490
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCTAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18372947|gb|BJ204549.1|BJ204549
EST:     AAGCTGAGTCTCTTCGATACAAGCTTCTTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: AAGCTGAGTCTCTTCGATACAAGCTTCT-CGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162254012|gb|FC430646.1|FC430646
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCTAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162277243|gb|FC453673.1|FC453673
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|37828865|gb|BJ586877.1|BJ586877
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162271940|gb|FC448150.1|FC448150
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|37852687|gb|BJ610695.1|BJ610695
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162271941|gb|FC448151.1|FC448151
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162206672|gb|FC382430.1|FC382430
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCTAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|37852142|gb|BJ610150.1|BJ610150
EST:     CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 20

TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgctt ... ggttttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtttgtgcttctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaatgtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag

- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT