1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCATGTGTTGCACTGTTCGTGGGGATCTTGTGCGGATGCTGGGTGAACTTCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaatggtcctattgatactgtggcagtgtttcgtgtgtaaaagcgcaaaacaactgagtgatgtggatacttcgtgttaagtattaacattttt...
species | Physcomitrella patens |
transcript | PP1S31_130V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAG GACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAACEST: gi|162176071|gb|FC351865.1|FC351865
genomic: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaat ... taatcctcagGACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAAC
EST: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAG GACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAACEST: gi|162156787|gb|FC333599.1|FC333599
genomic: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaat ... taatcctcagGACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAAC
EST: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAG GACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAACEST: gi|162253297|gb|FC428891.1|FC428891
genomic: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaat ... taatcctcagGACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAAC
EST: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAG GACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAACEST: gi|162195573|gb|FC371874.1|FC371874
genomic: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaat ... taatcctcagGACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAAC
EST: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAG GACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAACEST: gi|208359157|gb|DC934660.1|DC934660
genomic: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaat ... taatcctcagGACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAAC
EST: TCTCAGAAACAAAAAGG-CATGTTTGACCATATTATTATTGAGACCACAG GACTCGCAANCC-TGCAC-AATCATTCAA-CGTTCTAC-TTGAGEST: gi|162159887|gb|FC336140.1|FC336140
genomic: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaat ... taatcctcagGACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAG
EST: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAG GACTCGCANACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAACEST: gi|100394903|gb|BY989983.1|BY989983
genomic: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaat ... taatcctcagGACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAAC
EST: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAG GACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTTGAG-AGGAAEST: gi|100353131|gb|BY945621.1|BY945621
genomic: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaat ... taatcctcagGACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTT-GAGGAGGAA
EST: TCTCAGAAACAAAAAGGGCATGTTTGACCATATNATTATTGAGACCACAG GACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAACEST: gi|162187277|gb|FC363227.1|FC363227
genomic: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaat ... taatcctcagGACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAAC
EST: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAG GACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAACEST: gi|162162412|gb|FC339169.1|FC339169
genomic: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaat ... taatcctcagGACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGAGGAAC
EST: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAG GACTCGCAAACCCTGCACCAATCATTCANACGTTCEST: gi|100392220|gb|BY953254.1|BY953254
genomic: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaat ... taatcctcagGACTCGCAAACCCTGCACCAATCATTCAAACGTTC
EST: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAG GACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGGNAG-AA
genomic: TCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaat ... taatcctcagGACTCGCAAACCCTGCACCAATCATTCAAACGTTCTACCTTGAGG-AGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATGTGTTGCACTGTTCGTGGGGATCTTGTGCGGATGCTGGGTGAACTTCTCAGAAACAAAAAGGGCATGTTTGACCATATTATTATTGAGACCACAGgtgaggaaatggtcctattgatactgtggcagtgtttcgtgtgtaaaagcgcaaaacaactgagtgatgtggatacttcgtgttaagtattaacattttt
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