1 5' 3' | 2 5' 3' | 3 5' 3' |
ACATTATCAGCCGCTCTCATGTCAGAAGCCAAATTCGATGGTGCTGACTTGACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcactatttcagtcataacagcaaagtgaaaagttccagcgtatggtttgttcattctcatgtcatcgttcatctcaccctattctatatttagt...
species | Physcomitrella patens |
transcript | PP1S319_46V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAGEST: gi|208371438|gb|DC955774.1|DC955774
genomic: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
EST: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAGEST: gi|162220152|gb|FC396560.1|FC396560
genomic: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
EST: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAGEST: gi|162226254|gb|FC402962.1|FC402962
genomic: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
EST: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAGEST: gi|6227357|gb|AW155964.1|AW155964
genomic: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
EST: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTTCCGTTTTCACGAATGGCAGTTGTCGACCAGGGGGTTGCATTTCGACAEST: gi|162248517|gb|FC425293.1|FC425293
genomic: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTT-CCGTTTTCACGAATG-CAGTTGTCGAC-AGGG--TTGCATT-CGACA
EST: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAGEST: gi|162260313|gb|FC435616.1|FC435616
genomic: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
EST: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAGEST: gi|162260312|gb|FC435615.1|FC435615
genomic: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
EST: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAGEST: gi|7147910|gb|AW509832.1|AW509832
genomic: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
EST: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTCCGGTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACACATCAGEST: gi|67691573|gb|BJ951806.1|BJ951806
genomic: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
EST: GAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAGEST: gi|162246699|gb|FC425292.1|FC425292
genomic: GAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
EST: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAGEST: gi|162226255|gb|FC402963.1|FC402963
genomic: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
EST: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAGEST: gi|208353885|gb|DC942783.1|DC942783
genomic: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
EST: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGG GTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
genomic: GACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcact ... tcttacgcagGTTCCGTTTTCACGAATGCAGTTGTCGACAGGGTTGCATTCGACAAATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATTATCAGCCGCTCTCATGTCAGAAGCCAAATTCGATGGTGCTGACTTGACTGAAGTAATCATGTCGAAGGCATACGCAGTTGGAGCGAGCTTCAAGGgtaattcactatttcagtcataacagcaaagtgaaaagttccagcgtatggtttgttcattctcatgtcatcgttcatctcaccctattctatatttagt
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT