1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CACGAGGAAGTGTACTGTGAAGTGGTGGATGGGGGTGAATTGAAGTCCCGTCGTCACCTCAACGTGCGCGGAAAGAGTGCCACTCTACCCTCCATTACCGgtacgacagtgactccttggcagtaatatcaattaaatgtgtgtaccgaatgagttgaatttttgtttttttaaaaaataataagtagatatatattttt...
species | Physcomitrella patens |
transcript | PP1S318_21V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGTCACCTCAACGTGCGCGGAAAGAGTGCCACTCTACCCTCCATTACCG AGAAGGATTGGGAAGACATTAAATTTGGAGTAGAAAATAAAGTTGATTTCTEST: gi|162155347|gb|FC331246.1|FC331246
genomic: TCGTCACCTCAACGTGCGCGGAAAGAGTGCCACTCTACCCTCCATTACCGgtacgacagt ... gagtctgcagAGAAGGATTGGGAAGACATTAAATTTGGAGTAGAAAATAAAGTTGATTTCT
EST: TCGTCACCTCAACGTGCGCGGAAAGAGTGCCACTCTACCCTCCATTACCG AGAAGGATTGGGAAGACATTAAATTTGGAGTAGAANATAAAGTTGATTTCTEST: gi|162158981|gb|FC334828.1|FC334828
genomic: TCGTCACCTCAACGTGCGCGGAAAGAGTGCCACTCTACCCTCCATTACCGgtacgacagt ... gagtctgcagAGAAGGATTGGGAAGACATTAAATTTGGAGTAGAAAATAAAGTTGATTTCT
EST: TCGTCACCTCAACGTGCGCGGAAAGAGTGCCACTCTACCCTCCATTACCG AGAAGGATTGGGAAGACATTAAATTTTGGAGTAGAAAATAAAGTTGGATTTEST: gi|162173132|gb|FC348705.1|FC348705
genomic: TCGTCACCTCAACGTGCGCGGAAAGAGTGCCACTCTACCCTCCATTACCGgtacgacagt ... gagtctgcagAGAAGGATTGGGAAGACATTAAATTT-GGAGTAGAAAATAAAGTTG-ATTT
EST: TCGTCACCTCAACGTGCGCGGAAAGAGTGCCACTCTACCCTCCATTACCG AGAAGGATTGGGAAGACATTAAATTTGGAGTAGAAAATAAAGTTGATTTCTEST: gi|100369821|gb|BY967400.1|BY967400
genomic: TCGTCACCTCAACGTGCGCGGAAAGAGTGCCACTCTACCCTCCATTACCGgtacgacagt ... gagtctgcagAGAAGGATTGGGAAGACATTAAATTTGGAGTAGAAAATAAAGTTGATTTCT
EST: TCGTCACCTCAACGTGCGCGGAAAGAGTGCCACTCTACCCTCCATTACCG AGAAGGATTGGGAAGACATTTAATTTGGAGTAGAAAATAAAGTTGATTTCT
genomic: TCGTCACCTCAACGTGCGCGGAAAGAGTGCCACTCTACCCTCCATTACCGgtacgacagt ... gagtctgcagAGAAGGATTGGGAAGACATTAAATTTGGAGTAGAAAATAAAGTTGATTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGAGGAAGTGTACTGTGAAGTGGTGGATGGGGGTGAATTGAAGTCCCGTCGTCACCTCAACGTGCGCGGAAAGAGTGCCACTCTACCCTCCATTACCGgtacgacagtgactccttggcagtaatatcaattaaatgtgtgtaccgaatgagttgaatttttgtttttttaaaaaataataagtagatatatattttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaata