1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAAGTTTCTGTGTCTGGTGATGGAGTTCTGCTCCGGTGGAGACCTGCATACTTTACGGCAGCGGCAACCAGGGAAGCACTTCACGGAGCAGGCAGCAAGgtaggtagcgtttttgttggggcagtgggggcatttggaggtggcattaggcggggacgcagcgttgagattgatggtgcaagaagtgtggcaggttgtggttgacagcggtatgagtggcagggttgtgggtgaggtgtggttgattttggagcaggggtgggtggcggtgtaagctgaatgtggtgtgggtggtgcag
species | Physcomitrella patens |
transcript | PP1S316_69V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTTTACGGCAGCGGCAACCAGGGAAGCACTTCACGGAGCAGGCAGCAAG ATTCTATGCCGCGGAGGTGCTTCTGGCGCTGGAATACCTGCACATGATGGGEST: gi|162279607|gb|FC455359.1|FC455359
genomic: ACTTTACGGCAGCGGCAACCAGGGAAGCACTTCACGGAGCAGGCAGCAAGgtaggtagcg ... ggtggtgcagATTCTATGCCGCGGAGGTGCTTCTGGCGCTGGAATACCTGCACATGATGGG
EST: ACTTTACGGCAGCGGCAACCAGGGAAGCACTTCACGGAGCAGGCAGCAAG ATTCTATGCCGCGGAGGTGCTTCTGGCGCTGGAATACCTGCACATGATGGGEST: gi|162202777|gb|FC379551.1|FC379551
genomic: ACTTTACGGCAGCGGCAACCAGGGAAGCACTTCACGGAGCAGGCAGCAAGgtaggtagcg ... ggtggtgcagATTCTATGCCGCGGAGGTGCTTCTGGCGCTGGAATACCTGCACATGATGGG
EST: ACTTTACGGCAGCGGCAACCAGGGAAGCACTTCACGGAGCAGGCAGCAAG ATTCTATGCCGCGGAGGTGCTTCTGGCGCTGGAATACCTGCACATGATGGG
genomic: ACTTTACGGCAGCGGCAACCAGGGAAGCACTTCACGGAGCAGGCAGCAAGgtaggtagcg ... ggtggtgcagATTCTATGCCGCGGAGGTGCTTCTGGCGCTGGAATACCTGCACATGATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGTTTCTGTGTCTGGTGATGGAGTTCTGCTCCGGTGGAGACCTGCATACTTTACGGCAGCGGCAACCAGGGAAGCACTTCACGGAGCAGGCAGCAAGgtaggtagcgtttttgttggggcagtgggggcatttggaggtggcattaggcggggacgcagcgttgagattgatggtgcaagaagtgtggcaggttgtggttgacagcggtatgagtggcagggttgtgggtgaggtgtggttgattttggagcaggggtgggtggcggtgtaagctgaatgtggtgtgggtggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG