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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGgtcagtggtgaccagcttggtgatgagttcaagggatacgttttcaagattatgggaggatgtgacaagcagggtttccccatgaag

Basic information

species Physcomitrella patens
transcript PP1S311_33V6.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 5'ss of exon 4
-------TCGTCAATTTTATGACAAGC-GTCTTGCTCAAGAGgtcagtggtgaccagcttggtgatgagttcaag--ggatacgttttcaagattatgggaggatgtgacaagcagggtttccccatgaag-----------------------------------------------------------------
       |  ||||  | |||  | || ||      ||||   ||       | |||  || || | | |||  |  |  | ||  |||      |  || | |  ||   |  | | || |      | |                                                                 
GGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTG-TGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGgtagatgtttaagatgcttacatttgaatggttatgtttcattttgctttgctggcaggtgttctaatgtgaatgttccatttttatactgacag

upper sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 4
----------------TCGTCAATT-TTATGACAAGC--GTCTTGCTCAAGAGgtcagtggtgaccagcttggtgatgagttcaagggatacgttttcaagattatgggaggatgtgacaagcagggtttccccatgaag--------------------------------------------
                || |      || ||||||||  |  || |  | || |   |  |||  ||     | || | || |   |  | | | ||||      |   | |     |     |   ||  |    | |                                             
GGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTG-GACGTGTCC---GCCTTCTTCTTCACAGGGgtaaaaaggctctatttctattattgactttcggatattcatgcccttgctctgaccatattatgttacttgtatggcag

upper sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G054136_T06 (Zea mays), 5'ss of exon 3
----------------TCGTCAATTT-TATGACAAGC--GTCTTGCTCAAGAGgtcagtggtgaccagcttggtgatgagttcaagggatacgttttcaagattatgggaggatgtgacaagcagggtttccccatgaag--------------------------------------------------------------
                || |   |   | ||||||||  | ||| |  | || |  ||  ||      |||   |  | ||||      | | |    | |  ||| |     |   |    ||| ||   | ||  |                                                                
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTT-TTGACTTCTGGTCGTGTTCGTCTTCTGC-TCCATAGGGgtatagagacttcctatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtagggactccctgcttcc

upper sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 3
----------------TCGTCAATTT-TATGACAAGC--GTCTTGCTCAAGAGgtcagtggtgaccagcttggtgatgagttcaagggatacgttttcaagattatgggaggatgtgacaagcagggtttccccatgaag-----------------------------------------------
                || |   |   | ||||||||  | ||| |  | || |  ||  ||      |||   |  | ||||      | | |    | |  ||| |     |   |    ||| ||   | ||  |                                                 
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTT-TTGACTTCTGGTCGTGTTCGTCTTCTGC-TCCATAGGGgtatagagacttcctatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtag

upper sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 4
----------------TCGTCAATTT-TATGACAAGC--GTCTTGCTCAAGAGgtcagtggtgaccagcttggtgatgagttcaagggatacgttttcaagattatgggaggatgtgacaagcagggtttccccatgaag-----------------------------------------------
                || |   |   | ||||||||  | ||| |  | || |  ||  ||      |||   |  | ||||      | | |    | |  ||| |     |   |    ||| ||   | ||  |                                                 
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTT-TTGACTTCTGGTCGTGTTCGTCTTCTGC-TCCATAGGGgtatagagacttcctatgtccagtgtactctcaacaccatcttttactctgattcttatctgaacattcgatatcaattctgtag

upper sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
----------------------------------------------------------------TCG-TCAATTTTATGACAAGCGTCTTGCTCAAGAGgtcagtggtgaccagcttggtgatgagttca-agggatacg----ttttcaa-gattatgggaggatgtgacaagcagggtttccccatgaag-----
                                                                ||  || |     || |   | | |   |||    |  | | |   ||| |    |||| |  | | |  | | |     ||||||   ||  |  | |  | | |       | | |    ||   |     
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag

upper sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
-------------------------------------TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGgtcagtggtgaccagcttggtga--tgagttcaagggatacgttttcaagattatgggaggat---gtgacaagcagggtttccccatgaag
                                       | |     |||||     | | | ||||||| |      |||  |  | || | |   ||| | ||  ||| | | ||     || |       |   ||    |   | | |||   |  |  
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgatgcttcttttttcttttctccctctttcgttctgatttgagattcgtgaccag-

upper sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ26393 (Selaginella moellendorffii), 5'ss of exon 3
-------------------------------------TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGgtcagtggtgaccagcttggtga--tgagttcaagggatacgttttcaagattatgggaggat---gtgacaagcagggtttccccatgaag
                                       | |     |||||     | | | ||||||| |      |||  |  | || | |   ||| | ||  ||| | | ||     || |       |   ||    |   | | |||   |  |  
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgatgcttcttttttcttttctccctctttcgttctgatttgagattcgtgaccag-