Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag

Basic information

species Physcomitrella patens
transcript PP1S311_33V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 5'ss of exon 4
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctcttgtcatgctagtgctgggaataattgtcgatggatgtaaca-gaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag
|| || || |||||||| |||||||| ||||||||||| |||||||||||||||||||||||  | ||    |||||||| |  || ||  | ||| | |||| |   ||||    ||  |  ||    | || ||| |     |  |  |   || |    | | |||   ||| ||  | ||    |  |||| |||                                                                   
GGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGgtagatgtttaagatgcttacatttgaa-tggttatgttt-cattttgctttgctggcaggtgttctaatgtgaatgtt-ccattttta--tactgacag------------------------------------------------------------------

upper sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 4
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacg-ttaaccacctgccgcttcctcttg-----tcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag
|| || || |||||||| ||||| || |||||||||||||||||||| ||||||||||| ||  | ||    |||||||| |  || ||  | ||| | |||| || |  |      ||     |  || | |     ||||||   ||||  ||  |  |   | |   ||||    |                                                                                            
GGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggctctatttctattattgactttcggatattcatgcccttgctctgaccatattatgttacttgtatggcag-------------------------------------------------------------------------------------------

upper sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G054136_T06 (Zea mays), 5'ss of exon 3
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtaca-acgttaaccacctgccgcttcctcttgtcatg--ctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacc-tacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag
|| || || |||||||| ||||| |||||||||||||| || ||||| |||||||| || || |||||    || ||||| |  || ||| | ||  | |||| | |   |  | |  | | |  | ||||   ||    ||  | ||  || |  || ||     ||   | |  |  ||  || | || || | ||| |                                                                    
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatttacagtgtactctcagcaccatcttttactctgattc-ttatctgaacattcgatatcaattctgtagggactccctgcttcc--------------------------------------------------------------------

upper sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 3
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtaca-acgttaaccacctgccgcttcctcttgtcatg--ctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag
|| || || |||||||| ||||| |||||||||||||| || ||||| |||||||| || || |||||    || ||||| |  || ||| | ||  | |||| | |   |  | |  | | |  | ||||   ||    ||  | ||  || |  || ||     ||   | |  |  ||  ||                                                                                   
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatttacagtgtactctcagcaccatcttttactctgattc-ttatctgaacattcgatatcaattctgtag----------------------------------------------------------------------------------

upper sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 4
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtaca-acgttaaccacctgccgcttcctcttgtcatg--ctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag
|| || || |||||||| ||||| |||||||||||||| || ||||| |||||||| || || |||||    || ||||| |  || ||| | ||  | |||| | |   |  | |  | | |  | ||||   ||    ||  | ||  || |  || ||     ||   | |  |  ||  ||                                                                                   
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatgtccagtgtactctcaacaccatcttttactctgattc-ttatctgaacattcgatatcaattctgtag----------------------------------------------------------------------------------

upper sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctcttgtca-tgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag
|||||||| |||||||| |||||||||||||||||||| |||||||| ||||| || || ||  | || |  || ||||| |  ||  || | ||||||||||| |  ||   | ||          |  |     | ||  |  |   | ||||  ||  ||  | | |   |  || |    |      |  |||                                                                     
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttattta-tgtgatctggttattgtgtttag--------------------------------------------------------------------

upper sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag
||||||||||||||||| | ||| || || || ||||| |||||||| ||||||||||| || ||||| |  || ||||| |  ||  || | ||||||||||      ||| ||  |    | |  ||||  ||   | |       |||   | |  ||   |||    |   ||     || | |   || |       |  || | ||    |                                                
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgta----actaaaca--taataccttttctta-cacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacat------tgtttcgtaatgggtgaacag-------------------------------------------

upper sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 4
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag
|| || ||||||||||| ||||| || ||||||||||| || || |||||||||||||| ||  |||| |  || |||||    ||  || | ||  | |||        |   | |||   ||           | ||| | ||   ||        |||        || |||       | || |  |   | ||||  | ||||      |   || ||  |       | |  || |                       
GGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGCTTCATAGGGgtg-------agtaaactgggact----------gttctaatccttaaaa-----actgat--------cacaacccttaagttcatatttttatgcaagttgggtctatgagatttattacactttatgcttatttgagcag----------------------

upper sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag
|| || || ||||| || |||||||| ||||||||||| || ||||| ||||||||||| || || || |  || |||||    ||  || | ||  |||||      ||       |     |     |   |   | |    |      | ||   |||||||   || |   || |  | |||    |   ||  |  |  || ||| |     ||   |   || ||| |  |||    |   | |||||  |||  | ||
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatc--acggccagttagaa-gcatgttttgctaggac-catgttttgttgccttgtcatag--atgatggatgaaaactgttctagttttg--cttaagcag

upper sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtaca-acgttaaccacctgccgcttcc---tcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgca----cacctacttacaaggcg-------cgtcttgattttcggttgcaactataatgcagtaaagtaatg-aaatttttgttcttctgaag---
|| || || ||||| || |||||||| ||||||||||| ||||| || ||||||||||| ||  ||||||  || || || ||||| ||| | ||| |||||    |   |   |  || |    | |   | | |   ||  |    |      | || |       |||    ||   |   |  |||    | |||  |  ||  | |        ||||   | | |  ||||  | ||  |  |  ||| ||||   ||||    || | ||  |    
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgct-cgatgcttgatgaaactaatacgaattggcattttgcttgaacag

upper sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctct---tgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag
|| || || |||||||| |||||||||||||||||| | || ||||| ||||||||||| ||| | |    |   |||||||  || ||| |  ||||||||| |||| |       |     || |||    | || | ||  |  || || |  |   |                                                                                                           
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgatgcttcttttttcttttctccctctttcgttctgat-ttgagattcgtgaccag---------------------------------------------------------------------------------------------------------

upper sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ26393 (Selaginella moellendorffii), 5'ss of exon 3
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctct---tgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag
|| || || |||||||| |||||||||||||||||| | || ||||| ||||||||||| ||  | |    |   |||||||  || ||| |  ||||||||| |||| |       |     || |||    | || | ||  |  || || |  |   |                                                                                                           
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgatgcttcttttttcttttctccctctttcgttctgat-ttgagattcgtgaccag---------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208372979|gb|DC940610.1|DC940610
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|67698486|gb|BJ958719.1|BJ958719
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|208350926|gb|DC910473.1|DC910473
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCANACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162279665|gb|FC455898.1|FC455898
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|18374415|gb|BJ205993.1|BJ205993
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|18340116|gb|BJ172144.1|BJ172144
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|208394580|gb|DC953619.1|DC953619
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162220470|gb|FC396007.1|FC396007
EST:     GTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162236276|gb|FC411200.1|FC411200
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|19785812|gb|BQ040399.1|BQ040399
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|37831873|gb|BJ589885.1|BJ589885
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162245101|gb|FC422927.1|FC422927
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|18373396|gb|BJ204974.1|BJ204974
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|67575041|gb|BJ947865.1|BJ947865
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|37844063|gb|BJ602071.1|BJ602071
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|208359876|gb|DC934877.1|DC934877
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|208396632|gb|DC924300.1|DC924300
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|208377690|gb|DC932226.1|DC932226
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162239498|gb|FC417963.1|FC417963
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|18373564|gb|BJ205142.1|BJ205142
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162220469|gb|FC396006.1|FC396006
EST:     GCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162271070|gb|FC446097.1|FC446097
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|37844985|gb|BJ602993.1|BJ602993
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|67571348|gb|BJ944172.1|BJ944172
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|18367978|gb|BJ200062.1|BJ200062
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162271071|gb|FC446098.1|FC446098
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|18355513|gb|BJ187572.1|BJ187572
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162235066|gb|FC411201.1|FC411201
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|37832457|gb|BJ590469.1|BJ590469
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|18342104|gb|BJ174139.1|BJ174139
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162206668|gb|FC382426.1|FC382426
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|67694668|gb|BJ954901.1|BJ954901
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|208386094|gb|DC949005.1|DC949005
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|18371929|gb|BJ203531.1|BJ203531
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|67698381|gb|BJ958614.1|BJ958614
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|37821180|gb|BJ579246.1|BJ579246
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162279666|gb|FC455899.1|FC455899
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|67574954|gb|BJ947778.1|BJ947778
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162239497|gb|FC417962.1|FC417962
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|162245074|gb|FC422926.1|FC422926
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: gi|18352184|gb|BJ184238.1|BJ184238
EST:     GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG                         GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 45

GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAAGTCCGTGAGAGGCTGCATCGTTAGTCCCGATCTGTCAGTACTGAATCT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT