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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCGCTCCAACTGTGTATATGGTGCGGCCACCGATGCCGCCCTTGTACTTCTTCCTCATCGATGTCTCCTTGTCTGCTGTGAAGTCTGGGATGGTCAAGgtaaacggtcccatgatctttagtccattactaagagtgctgtttttagactaaacttgtgatggtcacaagtaatgtcaatgaaattctcttacacatt...

Basic information

species Physcomitrella patens
transcript PP1S30_364V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S30_364V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM5G874869_T01 (Zea mays), 5'ss of exon 4
TGTCGCTCCAACTGTGTATATGGTGCGGCCACCGATGCCGCCCTTGTACTTCTTCCTCATCGATGTCTCCTTGTCTGCTGTGAAGTCTGGGATGGTCAAGgtaaacggtcccatgatctttagtccattactaagagtgctgtttttagactaaacttg-tgatggtcacaagtaatgtcaatgaaattctcttacacatt
||| |||||||| |  |||||||||||||||||||||||||| |  || |||||  | || ||||| ||  | || || ||  ||  |||  || |  |||||   ||  ||||  | |||       | || || |   | |||||| | |   |||  |||    ||  | || || || | |  || | |||      
TGTTGCTCCAACAGAATATATGGTGCGGCCACCGATGCCGCCTTCCTATTTCTTTATTATTGATGTGTCTGTATCCGCAGTACAGAGTGGATTGCTTGAGgta--tggctccatctttttt-------ttctgagcgccatctttttaaattttccttaatgactcacattattactgccactta--tttttttag-----

upper sequence: PP1S30_364V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G143725_T01 (Zea mays), 5'ss of exon 4
TGTCGCTCCAACTGTGTATATGGTGCGGCCACCGATGCCGCCCTTGTACTTCTTCCTCATCGATGTCTCCTTGTCTGCTGTGAAGTCTGGGATGGTCAAGgtaaacggtcccatg---atctttagtccattactaagagtgctgtttttagactaaacttgtgatggtcacaagtaatgtcaatgaaattctcttacacatt
||| |||||||| |  |||||||||||||||||||||||||| |  || ||||| || || || || ||  ||||||| ||       ||  || |  |||||  || |   ||     | |||| |   ||  |  ||||||  | |||  | |  |    | |  | | ||  ||||  |    |  |  ||||  |    
TGTTGCTCCAACAGAATATATGGTGCGGCCACCGATGCCGCCGTCCTATTTCTTTCTTATTGACGTGTCAGTGTCTGCAGTTCGAAGCGGATTGCTTGAGgtat-cgtttttatctgtgtttttaatttttttttctgagtgccatctttttattttatcccttaatgactcacataattactgccacttattcttttag---

upper sequence: PP1S30_364V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA19G41400.2 (Glycine max), 5'ss of exon 4
TGTCGCTCCAACTGTGTATATGGTGCGGCCACCGATGCCGCCCTTGTACTTCTTCCTCATCGATGTCTCCTTGTCTGCTGTGAAGTCTGGGATGGTCAAGgtaaacggtcccatgatctttagtccattactaaga--gtgctgtttttagactaaacttgtgatggtcacaagtaatgtcaatga--aattctcttacacatt
||| || ||  ||| ||| ||||||||||| || ||||| ||  |||| ||||||||||||||||| ||| | |||||||| |    ||| ||| |  |||||        | | |  ||||| ||| |    |    || | |  |||  |   |  ||    |  |      |      ||| |  |||| |  |     ||
TGTTGCCCCTGCTGAGTACATGGTGCGGCCTCCTATGCCACCAGTGTATTTCTTCCTCATCGATGTTTCCATATCTGCTGTTAGAAGTGGCATGATTGAGgtatgt----tctttacttttagcccaatgtgtaccttgtacggcattttaatagattttacagttttttttttttgaaaaaataataaattgtactgttggtt