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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTTAATGGGGTGTTCATGAAAGTTAACAAAGCCACGATGAACATGTTGAGTCGAGTCGAGCCATATGTGACCTACGGgtaggcagcgaatggcgtaaaactgagttttggagaatttcattttgaaagaggtgttttgccttccccgacttgttctggatttgaattgatcacgagttcggctttcaattgtgcttgcag

Basic information

species Physcomitrella patens
transcript PP1S2_667V6.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S2_667V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ23123 (Selaginella moellendorffii), 5'ss of exon 4
ATCTTTAATGGGGTGTTCATGAAAGTTAACAAAGCCACGATGAACATGTTGAGTCGAGTCGAGCCATATGTGACCTACGGgtaggcagcgaatggcgtaaaactgagttttggagaatttcattttgaaagaggtgttttgccttccccgacttgttctggatttgaattgatcacgagttcggctttcaattgtgcttgcag
||||| ||||||||||||||||| || ||||| || || ||||||||| | |   |||||||||| || ||||| |||||||| |   |          ||  | |   |   |  |||||   |    | |  | |   |                                                              
ATCTTCAATGGGGTGTTCATGAAGGTGAACAAGGCAACCATGAACATGCTCAAGAGAGTCGAGCCGTACGTGACTTACGGgtaagtttctttgttttccaagatcaccatc--acgatttc---taagcaaaactctccag--------------------------------------------------------------

upper sequence: PP1S2_667V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ20182 (Selaginella moellendorffii), 5'ss of exon 4
ATCTTTAATGGGGTGTTCATGAAAGTTAACAAAGCCACGATGAACATGTTGAGTCGAGTCGAGCCATATGTGACCTACGGgtaggcagcgaatggcgtaaaactgagttttggagaatttcattttgaaagaggtgttttgccttccccgacttgttctggatttgaattgatcacgagttcggctttcaattgtgcttgcag
||||| ||||||||||||||||| || ||||| || || ||||||||| | |   |||||||||| || ||||| ||||||||||   |          ||  | |   |   |  |||||   |    | |  | |   |                                                              
ATCTTCAATGGGGTGTTCATGAAGGTGAACAAGGCAACCATGAACATGCTCAAGAGAGTCGAGCCGTACGTGACTTACGGgtaggtttctttgttttccaagatcaccatc--acgatttc---taagcaaaactctccag--------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208376427|gb|DC902738.1|DC902738
EST:     AAAGCCACGATGAACATGTTGAGTCGAGTCGAGCCATATGTGACCTACGG                         GTACCCTAATTTGAAGAGTGTTCGTGAATTGATCTATAAGCGTGGGCACGG
genomic: AAAGCCACGATGAACATGTTGAGTCGAGTCGAGCCATATGTGACCTACGGgtaggcagcg ... gtgcttgcagGTACCCTAATTTGAAGAGTGTTCGTGAATTGATCTATAAGCGTGGGCACGG
EST: gi|162220043|gb|FC396520.1|FC396520
EST:     AAAGCCACGATGAACATGTTGAGTCGAGTCGAGCCATATGTGACCTCCGG                         GTACCCTAATTTGAAGAGTGTTCGTGAATTGATCTATAAGCG
genomic: AAAGCCACGATGAACATGTTGAGTCGAGTCGAGCCATATGTGACCTACGGgtaggcagcg ... gtgcttgcagGTACCCTAATTTGAAGAGTGTTCGTGAATTGATCTATAAGCG