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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTTGTGTACCAATTGCTGAAAGGGGTTGCTCATTGCCACAGCCACGGAGTAATGCACAGgtataccggcgacgacaccatatcgcatctcaaagtccgaaagggcggggtctctagccttctgtttgaagtctggatacatagcttaggttctgaaaagggagtgttgtaacactcagttgtattgagtttattcatgttgtagacgtgttcttggacttgattttcactcaattttcgcctctttttcag

Basic information

species Physcomitrella patens
transcript PP1S2_590V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S2_590V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ19614 (Selaginella moellendorffii), 5'ss of exon 3
AGCTTTGTGTACCAATTGCTGAAAGGGGTTGCTCATTGCCACAGCCACGGAGTAATGCACAGgtataccggcgacgacaccat--atcgcatctcaaagtccgaaagggcggggtctctagccttctgtttgaagtctggatacatagcttaggttctgaaaagggagtgttgtaacactcagttgtattgagtttattcatgttgtagacgtgttcttggacttgattttcactcaattttcgcctctttttcag
|| ||  |||| ||  ||   || || || || |||||||||||||| ||||| ||||||||||||       |      | |   | |  | |           |  | | |  || | ||                                                                                                                                      
AGTTTCATGTATCAGCTGTGCAAGGGCGTCGCGCATTGCCACAGCCATGGAGTGATGCACAGgtattttcttaagtttttccttggtagtttttttcttctttctaacgagtgtccttttgcag------------------------------------------------------------------------------------------------------------------------------------