1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGCTCGTGCCACCGCCTTTGGATTGATGAAGATCAATGATCAGGGGCGGATCATTGAATTTGCCGAGAAACCGAAGGGTGACGAGCTCAAGGCTATGCAGgtaatcagcggtgtcaaaaaccgacagaataaacttaagatcttgtttgtggatcatcttgtcccaacaaattcggagtagaacactaggcgatagaata...
species | Physcomitrella patens |
transcript | PP1S2_392V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCATTGAATTTGCCGAGAAACCGAAGGGTGACGAGCTCAAGGCTATGCAG GTGGACACGACAGTTTTGGGTTTAGATGCCGAGAGGGCCAAAGAAATGCCCEST: gi|162191148|gb|FC367826.1|FC367826
genomic: TCATTGAATTTGCCGAGAAACCGAAGGGTGACGAGCTCAAGGCTATGCAGgtaatcagcg ... gatgaatcagGTGGACACGACAGTTTTGGGTTTAGATGCCGAGAGGGCCAAAGAAATGCCC
EST: TCATTGAATTTGCCGAGAAACCGAAGGGTGACGAGCTCAAGGCTATGCAG GTGGACACGACAATTTTGGGTTTAGATGCCGAGAGGGCCAAAGAAATGCCC
genomic: TCATTGAATTTGCCGAGAAACCGAAGGGTGACGAGCTCAAGGCTATGCAGgtaatcagcg ... gatgaatcagGTGGACACGACAGTTTTGGGTTTAGATGCCGAGAGGGCCAAAGAAATGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTCGTGCCACCGCCTTTGGATTGATGAAGATCAATGATCAGGGGCGGATCATTGAATTTGCCGAGAAACCGAAGGGTGACGAGCTCAAGGCTATGCAGgtaatcagcggtgtcaaaaaccgacagaataaacttaagatcttgtttgtggatcatcttgtcccaacaaattcggagtagaacactaggcgatagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaataaa