Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTTGACCTACCGTGAAGTTGTTGCTATTGTCATGCAACGCCTTATTTCCATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaaccagcggcgcaaaaatgcccacgtttttagcttgttatcaatgtctcgtgaatgatatagtaagtattggcttttcaaagagtttttttcggatataggtcatgtcctgtagtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctag

Basic information

species Physcomitrella patens
transcript PP1S2_16V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os02g01560.1 (Oryza sativa), 5'ss of exon 3
GCGTTGACCTACCGTGAAGTTGTTGCTATTGTCATGCAACGCCTTATTTCCATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgag-taaaccagcggcgcaaa-aatgcccacgtttttagcttgt-tatcaatgtctcgtgaatgatatagtaagtattggcttttcaaagagtttttttcggatataggtcatgtcctgtagtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctag
||  |||| |||||||| ||| || ||||  ||||||| |||| | | |   |||||||||||||| | |||||||||  ||||||||| || |||||||||  | | || |      ||||  |||     | |   |   |  | ||  ||    | |||  |  |     |  ||||   ||||   ||                                                                                     
GCTCTGACATACCGTGAGGTTATTTCTATCCTCATGCAGCGCCATGTCTTGGTTGATGGCAAGGTCAGGACTGACAAGACCTACCCAGCTGGTTTCATGGgtatgctcaatcgttattgcaatcaatatatgcttcagtgtatgatgtaaaaacacttggtgctttgtgctaaacatattcttttttggcag-------------------------------------------------------------------------------------

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G035017_T01 (Zea mays), 5'ss of exon 3
GCGTTGACCTACCGTGAAGTTGTTGCTATTGTCATGCAACGCCTTATTTCCATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaaccagcggcgcaaaaatgcccacgtttttagcttgttatcaatgtctcgtgaatgatatagtaagtattggcttttcaaagagtttttttcggatataggtcatgtcctgtagtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctag
||  ||| ||||||||| ||  || ||||  | |||||||||| | |     |||||||||||||| | |||||||||  |||||| || ||||||||||||  |   |  | |   |  || ||       |  ||   |   |||     | | ||   |||| |     || |    ||||   ||                                                                                     
GCTCTGAACTACCGTGAGGTCATTTCTATCCTGATGCAACGCCATGTACTTGTTGATGGCAAGGTCAGGACTGACAAGACCTACCCTGCTGGGTTCATGGgtatgcctat-atctctgttaatatagaaggatccttgtatgcctat-----tttggttgctgatttgt--ggtgtcattttttggcag-------------------------------------------------------------------------------------

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G100005_T01 (Zea mays), 5'ss of exon 1
GCGTTG-ACCTACCGTGAAGTTGTTGCTATTGTCATGCAACGCCTTATTTCCATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgag--taaaccagcg-----gcgcaaaaatgcccacgtttttagcttg-ttatcaatgtctcgtga-atgatatagtaagtattggcttttcaaagagtttttttcggatataggtcatgtcctgtagtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctag
  |||  |  | | |   |     | | ||     ||||||||| | |     |||||||||||||| | |||||||||  |||||| || ||||||||||||  |  || | |         ||  ||| || || |      ||  ||| ||    || | | |||  ||  | | | |                                                                                                       
ATGTTATATATTCAGCTCATACCATAC-ATGAATTTGCAACGCCATGTACTTGTTGATGGCAAGGTCAGGACTGACAAGACCTACCCTGCTGGGTTCATGGgtatgcctatatctctattaatgcataaagatacctatacacctattttggttgctgatttgtggtgtcattttttggcag------------------------------------------------------------------------------------------------------

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G015859_T01 (Zea mays), 5'ss of exon 2
-------------------------------------GCGTTGACCTACCGTGAAGTTGTTGCTATTGTCATGCAACGCCTTATTTCCATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaaccagcggcgcaaaaatgcccacgtttttagcttgttatcaatgtctcgtgaatgat-atagtaagtattggcttttcaaagagtttttttcggatataggtcatgtcctgtagtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctag
                                     ||  |||| || | ||| ||  || ||||  | ||||||| |  | |     |||||||||||||| | |||||||||  |||||| || ||||||||||||    | |||     | |     |    | |  |  || |   |||  |  | |  ||  || | ||     || |    ||||   ||                                                                                     
GCCTCTGATCCTCATCATCAGGAATAGGCTCAAGTATGCACTGACGTATCTTGAGGTCATTTCTATCCTGATGCAACACTATGTACTTGTTGATGGCAAGgtcaggactgacaagacctaccctgctgggttcatgggt----atacctatatctc-----tattaatgcataaagatacctatacacatattttggttgctgatttgtggtgtcattttttggcag-------------------------------------------------------------------------------------

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G159228_T01 (Zea mays), 5'ss of exon 3
-------------------------------------GCGTTGACCTACCGTGAAGTTGTTGCTATTGTCATGCAACGCCTTATTTCCATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgag--taaaccagcg-----gcgcaaaaatgcccacgtttttagcttg-ttatcaatgtctcgtga-atgatatagtaagtattggcttttcaaagagtttttttcggatataggtcatgtcctgtagtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctag
                                     ||  |||| ||  |||| ||  || ||||  | |||||||||| | |     |||||||||||||| | |||||||||  |||||| || ||||||||||||  |  |||| |         ||  ||| || || |      ||  ||| ||    || | | | |  ||  | | | |                                                                                                       
GCCTCTGATCCTCATCATCAGGAACATGCTCAAGTATGCACTGACGTATTGTGAGGTCATTTCTATCCTGATGCAACGCCATGTACTTGTTGATGGCAAGgtcaggactgacaagacctaccctgctgggttcatgggtatgcctaaatctctattaatgcataaagatacctatacacatattttggttgctgatttatggcgtcattttttggcag------------------------------------------------------------------------------------------------------

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G132028_T01 (Zea mays), 5'ss of exon 5
GCGTTGACCTACCGTGAAGTTGTTGCTATTGTCATGCAACGCCTTATTTCCATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgag--taaaccagcg-----gcgcaaaaatgcccacgtttttagcttg-ttatcaatgtctcgtgaatgatatagtaagtattggcttttcaaagagtttttttcggatataggtcatgtcctgtagtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctag
              | |     |    ||     ||||||||| | |     |||||||||||||| | |||||||||  |||||| || ||||||||||||  |  || | |         ||  ||| || || |      ||  ||| ||    || | | |||  | || |  |  | |                                                                                                   
-------------CTCATACCATA--CATGAATTTGCAACGCCATGTACTTGTTGATGGCAAGgtcaggactgacaagacctaccctgctgggttcatgggtatgcctatatctctattaatgcataaagatacctatacacctattttggttgctgatttgtggtg--tcatttttttggcag--------------------------------------------------------------------------------------------------

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ14824 (Selaginella moellendorffii), 5'ss of exon 3
GCGTTGACCTACCGTGAAGTTGTTGCTATTGTCATGCAACGCCTTATTTCCATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaaccagcggcgcaaaaatgcccacgtttttagcttgttatcaatgtctcgtgaatgatatagtaagtattggcttttcaaagagtttttttcggatataggtcatgtcctgtagtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctag
|| ||||| ||||| || || || || || || ||||||   || || || ||||||||||||||||| || ||||||||||| || || || ||||||||| |||    |     |         |  ||     |  |||| |      |  |    |                                                                                                                  
GCCTTGACTTACCGAGAGGTGGTCGCAATCGTGATGCAAAAGCTCATCTCGATTGATGGCAAGGTCCGGACGGACAAGTGCTATCCCGCTGGATTCATGGgtaagttc-tcgatttcttttcctctcttacccgactgacttgcttgtttcgcttttctag-----------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67716905|gb|BJ967164.1|BJ967164
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|208391390|gb|DC933567.1|DC933567
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|208389935|gb|DC937766.1|DC937766
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|208376484|gb|DC922515.1|DC922515
EST:     GGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: GGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|162236728|gb|FC413407.1|FC413407
EST:     GACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: GACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|67719943|gb|BJ970202.1|BJ970202
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|18361523|gb|BJ193589.1|BJ193589
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|162192347|gb|FC371642.1|FC371642
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|208382233|gb|DC914852.1|DC914852
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|162279719|gb|FC455627.1|FC455627
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|67728248|gb|BJ978507.1|BJ978507
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|162279720|gb|FC455628.1|FC455628
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|208368148|gb|DC947708.1|DC947708
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|18365612|gb|BJ197689.1|BJ197689
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|162194794|gb|FC371641.1|FC371641
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|67695781|gb|BJ956014.1|BJ956014
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|67573065|gb|BJ945889.1|BJ945889
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|208382671|gb|DC923257.1|DC923257
EST:     CGTANTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|162236729|gb|FC413408.1|FC413408
EST:     ACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: ACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|18361547|gb|BJ193613.1|BJ193613
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|162190584|gb|FC366222.1|FC366222
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|67572408|gb|BJ945232.1|BJ945232
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|67728201|gb|BJ978460.1|BJ978460
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|67719989|gb|BJ970248.1|BJ970248
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|67696449|gb|BJ956682.1|BJ956682
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|208400408|gb|DC908635.1|DC908635
EST:     CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: gi|208390785|gb|DC945858.1|DC945858
EST:     TGATGGCAAGGTNCGTACTGACNAGTGNTACCCAGCAGGGTTCATGG                         ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: TGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 33

GCGTTGACCTACCGTGAAGTTGTTGCTATTGTCATGCAACGCCTTATTTCCATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAACAAAGGTCGTTTCACCCTGCACAACATCAGCGCCGAAGAAGCCAAG




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