Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag

Basic information

species Physcomitrella patens
transcript PP1S29_222V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os03g38000.2 (Oryza sativa), 5'ss of exon 1
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctg--tgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
| ||| | ||||| || ||||| |||| | ||||| |||||||| || ||||||||||| | || ||||||||||||||||| || ||||| ||||||| | ||| |||||| | ||| ||| | | | || | | |||| | | | ||| || | | || || |||| | |
TCGAGCTCTACGCCGAGAAGGTCGTCAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCCCTCCGCTACAAGCTTCTTGGAGGCCTCGCCGTCCGCAGgt--------atagcactcctttcaattgctacttcgctttgttgtcatggaggatgcatctgtgatgggatctt-gtggtgcaacgtactagttgttttagttggtta----------------------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
||||| | ||||| || ||||| |||||| | ||||| ||||||||||| ||||||||||| | || |||||||||||||| || || |||||| | ||||| | | || ||| | | | | || || || | | | | | ||| ||| |||| | | || | || | || || | | | ||
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcac-------------ttattccctacattgcacaacactg---ctatgttaatatgatgtgcattt--cttagttgttgtagacttgtagtcactatcac--agcaggctcgg---------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA16G33230.1 (Glycine max), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
| ||| | || || || ||||| |||||||| |||||||| |||||||||||||||||||| | || ||||||||||| || || || ||||| ||||||| | || || | ||| || | | | || | | |||| | | | | || ||| |||| |
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCCTGTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTTCTCGGTGGCCTCGCCGTTCGCAGgta----attatattactctgcaaattcattcatttgtataata-tatcttaatatcttgatatcttaatttcagatgtcat---taggcatgggttttaattttatt---------------------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA10G26890.1 (Glycine max), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
|||| | || || |||||||| ||||| ||||| || ||||| ||||||||||| |||||| | || |||||||| ||||| || || || |||||||||| | | | ||||| || || || | | | || ||| || | || | || | || | || || || ||| | || | | |
TTGAACTTTATGCTGAAAAGGTCAACAATAGGGGTCTTTGCGCTATTGCTCAGGCTGAGTCTCTTCGCTACAAGCTCCTTGGTGGACTCGCTGTGCGCAGgt---------gtata-----ttcattttttagtt--------gataaaaatatgtaatttttttttaaattgtttcattgcgattcatg--tcgttgtgaaaaactgtagaaaatt--gctgtcg---------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA10G26790.1 (Glycine max), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
| || | || || |||||||| ||||| ||||| || ||||| ||||||||||| |||||| | || |||||||| ||||| || || || |||||||||| || | ||| | || ||| | | | |||||| | || || || || | | ||| |
TCGAACTTTATGCTGAAAAGGTCAACAATAGGGGTCTTTGCGCTATTGCTCAGGCTGAGTCTCTTCGATACAAGCTCCTTGGTGGACTCGCTGTGCGCAGgtgtatattca------ttttttagttgataaaaatatgtaatctttttttaaaattgtttcattgcgattcatgtcgttgtg---aaaaaatgtagaaaattgctgtc--------------------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
| ||| | || || || ||||| |||||||| ||||| || |||||||||||||||||||| | || ||||||||||| || || || || || ||||||| || || | || | || | | | | | || | || | || | |||||| ||| | | |||| | | |||| |
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCCTCTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTTCTCGGTGGCCTCGCTGTTCGCAGgt---ataacatgttactctgctaatgcattcttctagtttgtgatgtgatttatcattaggcaag-gattttaggtttagttattacgaatt--tgttgattact-----------------------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA16G33240.1 (Glycine max), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcga-tttttac-ttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
| ||| | || || || ||||| |||||||| ||| |||| |||||||||||||||||||| | || |||||||| || || || || || || ||||||| | | || | || |||| || || | || ||| || ||| ||| || ||| ||| |||| ||
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCTTGTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTCCTCGGCGGCCTCGCTGTTCGCAGgtataacat-attactctgctaatgcattcttatatatcaggcaaggattctagctttggttattatgaatttgtacattacttgcttaatgtttatgttt------------------------------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
||||| | || || || |||||||||||||| || || || ||||| |||||||| |||||||| || |||||||||||||| || || || || || |||| ||| | |||| ||| | || || || || || ||| |||| ||| | | | | | |||| ||||| | | | |
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacat----------------ttctctagttcgttt-gctatgttactttgtt-tgatcag------tttagtttatcattagagactgatttggataggttactagtgtatataagcat-----------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT2G31610.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaata-attattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
||||| | || || || |||||||||||||| || || || |||||||||||||| |||||| | || ||||||||||| || || ||||| || ||||||| ||| | | | | | || | | | | | | || | | |||| | | || | | | || ||| || | | |
TTGAGCTCTATGCTGAGAAGGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTACGTTACAAGCTTCTCGGTGGTCTTGCTGTTCGCAGgtacgacattt---ctctagtatgtttttgtgtattctctctcaattgctgttgttattgtttagcttacttggtcctaatagtgaaatgtataggatacaac---------------------------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv04s0008g01750.t01 (Vitis vinifera), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
| ||| | || || || || |||||||| |||||||| || |||||||||||||| ||||| |||| ||||||||||||||||| ||||| || || |||| | || | | || | ||||| | | | | ||| | | | | | ||| | | || | || ||| | | |
TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgt---aaatcaagttcttgttatctgatgttaatt----tggttgctctaccatgctac-tagatacagtattttcaaatcggtttga--atcattaatggacctatgaa-------------------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv09s0002g01460.t01 (Vitis vinifera), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
| ||| | || || || || ||||||||||| || || || |||||||||||||| ||||| | || ||||||||||||||||||||||| || ||||||| | | | | || ||| || || ||| | || | | | |||| | | | |||| | ||| | || | || || || |
TGGAGCTTTATGCTGAGAAAGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCACTACGTTACAAGCTTCTTGGAGGGCTTGCTGTTCGCAGgtgggtatcaacgtttccaattttattgtcatattttcataatacagtgtatcttaaatggttatggaatttacagtttgtagtatgctgat-atatttaa----------------------------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgt-tcgatgccaggacacctctttcatcttctaattcccgtagcgg-tggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
| |||||||| || || || || |||||||| || || || || ||||||||||||| || | ||||||||||| |||||||| |||||||| ||||||| | | || | | | || || | || | | | | || || ||| | | ||| ||| ||||
TGGAGTTGTATGCCGAGAAAGTCAACAACAGAGGACTTTGTGCTGTTGCTCAGGCCGAATCGCTACGGTACAAGCTCCTTGGAGGCCTTGCCGTTCGCAGgtatacaaatcaaatttcatttctctatttttgatgaaataaacaaataaataaataaaaaattagtttaattaatgtatagttgatttatacaaattta-------------------------------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ34676 (Selaginella moellendorffii), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
| ||| |||| || || ||||| |||||| | ||||| |||||||| ||||| |||||||||||||| |||||||| || ||||| || ||||| || ||||| ||| || ||| | | | | | |
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttc--tttcttttttggcct-tggtgctcag-----------------------------------------------------------------------------------------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ31296 (Selaginella moellendorffii), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
| ||| |||| || || ||||| |||||| | ||||| |||||||| ||||| |||||||||||||| |||||||| || ||||| || ||||| || ||||| ||| | || | || | || | || | | ||
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgat---------ttttctttcttttttggccttggtgctaagagttctctacttcgtcag-----------------------------------------------------------------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ34304 (Selaginella moellendorffii), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
| ||| |||| || || ||||| |||||| | ||||| |||||||| ||||| |||||||||||||| |||||||| || ||||| || ||||| || ||||| ||| | || | || | || | || | | |||
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgat---------ttttctttcttttttggccttggtgctaagagttctctactttgtcag-----------------------------------------------------------------------------------------

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ31038 (Selaginella moellendorffii), 5'ss of exon 3
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag
| ||| |||| || || ||||| |||||| | ||||| |||||||| ||||| |||||||||||||| |||||||| || ||||| || ||||| || ||||| ||| | || | || | || || | | ||
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgat---------ttttctttcttttttggccttggtgctaagacttctctacttcgtcag-----------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37833126|gb|BJ591138.1|BJ591138
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162259901|gb|FC436036.1|FC436036
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTCCCGTGCGCAG                         GGCGTGTTACGGAGTGCTGAGGTTTTTCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|100378962|gb|BY986505.1|BY986505
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|67709528|gb|BJ965344.1|BJ965344
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|67717578|gb|BJ967837.1|BJ967837
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162276013|gb|FC452289.1|FC452289
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162238647|gb|FC418191.1|FC418191
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162227653|gb|FC402334.1|FC402334
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTTTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGTTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|37848305|gb|BJ606313.1|BJ606313
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18342128|gb|BJ174163.1|BJ174163
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAAGTGCTGAGGTTTATCATTGGAGAGCGGTGCCAAGGGC
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGA-GTGCTGAGGTTTATCAT-GGAGAGCGGTGCCAAGGGC
EST: gi|67726093|gb|BJ976352.1|BJ976352
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162259362|gb|FC436227.1|FC436227
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|37821206|gb|BJ579272.1|BJ579272
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|37839877|gb|BJ597885.1|BJ597885
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18356425|gb|BJ188484.1|BJ188484
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18343666|gb|BJ175704.1|BJ175704
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCT
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGA-GTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCT
EST: gi|162254376|gb|FC430511.1|FC430511
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18361069|gb|BJ193133.1|BJ193133
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18335223|gb|BJ167241.1|BJ167241
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162226892|gb|FC403080.1|FC403080
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|37831992|gb|BJ590004.1|BJ590004
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|37838960|gb|BJ596968.1|BJ596968
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|37845113|gb|BJ603121.1|BJ603121
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTNTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGNTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162259569|gb|FC435496.1|FC435496
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|208363095|gb|DC958008.1|DC958008
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGC-TGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18335112|gb|BJ167130.1|BJ167130
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|67726844|gb|BJ977103.1|BJ977103
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18338462|gb|BJ170486.1|BJ170486
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18332762|gb|BJ164775.1|BJ164775
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18330673|gb|BJ162679.1|BJ162679
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|208362665|gb|DC939533.1|DC939533
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCT-GCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162251398|gb|FC427689.1|FC427689
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18352298|gb|BJ184352.1|BJ184352
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCT
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGA-GTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCT
EST: gi|18342319|gb|BJ174354.1|BJ174354
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATTGGAGAGCGGTGCCAAGGGCT
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCAT-GGAGAGCGGTGCCAAGGGCT
EST: gi|18367767|gb|BJ199850.1|BJ199850
EST:     CANGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGANAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18350622|gb|BJ182673.1|BJ182673
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|19790485|gb|BQ041896.1|BQ041896
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162254375|gb|FC430510.1|FC430510
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18372240|gb|BJ203842.1|BJ203842
EST:     AGGCCGAGTCTTTGCGGTACAAGCTTCTTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: AGGCCGAGTCTTTGCGGTACAAGCTTCTT-GGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|37821439|gb|BJ579505.1|BJ579505
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|67723068|gb|BJ973327.1|BJ973327
EST:     GCCGTGCGCAG                         GGCGTGNTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: GCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162222971|gb|FC399927.1|FC399927
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|7047187|gb|AW477081.1|AW477081
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|67720681|gb|BJ970940.1|BJ970940
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162259363|gb|FC436228.1|FC436228
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162217178|gb|FC392542.1|FC392542
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162247018|gb|FC422192.1|FC422192
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162259902|gb|FC436037.1|FC436037
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18351686|gb|BJ183738.1|BJ183738
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAG
EST: gi|67718049|gb|BJ968308.1|BJ968308
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCCG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|37831026|gb|BJ589038.1|BJ589038
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|67726548|gb|BJ976807.1|BJ976807
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCCG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162274783|gb|FC450524.1|FC450524
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18341762|gb|BJ173797.1|BJ173797
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18329334|gb|BJ161340.1|BJ161340
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|7287029|gb|AW599516.1|AW599516
EST:     TCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: TCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162222970|gb|FC399926.1|FC399926
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162238646|gb|FC418190.1|FC418190
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162226891|gb|FC403079.1|FC403079
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162264071|gb|FC439925.1|FC439925
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|100361910|gb|BY947688.1|BY947688
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162274782|gb|FC450523.1|FC450523
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|67724505|gb|BJ974764.1|BJ974764
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|37829948|gb|BJ587960.1|BJ587960
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|37833361|gb|BJ591373.1|BJ591373
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162227667|gb|FC402335.1|FC402335
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162272710|gb|FC448336.1|FC448336
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162206864|gb|FC382726.1|FC382726
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162268227|gb|FC443905.1|FC443905
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTCCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162264070|gb|FC439924.1|FC439924
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162259568|gb|FC435495.1|FC435495
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|37820999|gb|BJ579065.1|BJ579065
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18340063|gb|BJ172091.1|BJ172091
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|67718357|gb|BJ968616.1|BJ968616
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|67719120|gb|BJ969379.1|BJ969379
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162247019|gb|FC422193.1|FC422193
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18332424|gb|BJ164437.1|BJ164437
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|67704567|gb|BJ964800.1|BJ964800
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|67727433|gb|BJ977692.1|BJ977692
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|37822861|gb|BJ580927.1|BJ580927
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|19788536|gb|BQ040786.1|BQ040786
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162268228|gb|FC443906.1|FC443906
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|162206865|gb|FC382727.1|FC382727
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|67712794|gb|BJ966243.1|BJ966243
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
EST: gi|18334395|gb|BJ166412.1|BJ166412
EST:     CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAG                         GGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG
genomic: CAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 107

TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgcc ... gtggttacagGGCGTGCTACGGAGTGCTGAGGTTTATCATGGAGAGCGGTGCCAAGGGCTGTGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG