1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctccttgttaccaatacataattcttttttttcagtagtctctaatggtttttttcgagatattttggtcttcacattaagctggagtgggtaa...
species | Physcomitrella patens |
transcript | PP1S299_37V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGACEST: gi|208388439|gb|DC957049.1|DC957049
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGAC
EST: TAGCAGAAACTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGACEST: gi|208400674|gb|DC908971.1|DC908971
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGAC
EST: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGACEST: gi|208351479|gb|DC921784.1|DC921784
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGAC
EST: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGACEST: gi|208356325|gb|DC957359.1|DC957359
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGAC
EST: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGACEST: gi|208358616|gb|DC949951.1|DC949951
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGAC
EST: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGACEST: gi|37832955|gb|BJ590967.1|BJ590967
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGAC
EST: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGACEST: gi|208384733|gb|DC907150.1|DC907150
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGAC
EST: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGACEST: gi|208378991|gb|DC922837.1|DC922837
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGAC
EST: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGACEST: gi|208370657|gb|DC936145.1|DC936145
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGAC
EST: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGACEST: gi|208345784|gb|DC921025.1|DC921025
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGAC
EST: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGACEST: gi|100447337|gb|CJ971636.1|CJ971636
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGAC
EST: TAGCAGAAGCTGCTCTCTCAA-GTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCC-TGTTGCAGCAGGAGTTGGAGAEST: gi|208386416|gb|DC937083.1|DC937083
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGA
EST: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGACEST: gi|208392391|gb|DC907896.1|DC907896
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTTGCAGCAGGAGTTGGAGAGACTCCGCACTGAC
EST: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAG GATCATCACTTCGCCATGTTTGCAGCAGGAGTTGGAGAGACTCCCCACTGA
genomic: TAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctcc ... tgtgatgtagGATCATCACTTCGCCATGTT-GCAGCAGGAGTTGGAGAGACTCCGCACTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGAAATGGTAGCAGAAGCTGCTCTCTCAAAGTTCAAAGGACAAATGCAAAGCTCTCAGgtgtttctccttgttaccaatacataattcttttttttcagtagtctctaatggtttttttcgagatattttggtcttcacattaagctggagtgggtaa
- - - - - - - AGAAGC
- - - - - - - - AAGCTG
- - - - - - - - AGCTGC
- - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - GCAAAG