1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTTGTCTATAATTCTAGGATTTCAGCACTATATTACCATGCTTGGCACATCTGTGCTGATTCCACTCACTGTCATACGAGCGATCGGTGGAGAAGCGgtgcaacacgagtcctactctttcacttagtacatttttttgtgtttttttgcttatgggtatttgtgcattttccatgaagcgcaacgagcagaaacac...
species | Physcomitrella patens |
transcript | PP1S297_61V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATCTGTGCTGATTCCACTCACTGTCATACGAGCGATCGGTGGAGAAGCG GGTGACCTAGCAAGGACAATACAGTCTGTGCTGTTCGTGAATGCGATCAATEST: gi|18331080|gb|BJ163086.1|BJ163086
genomic: CATCTGTGCTGATTCCACTCACTGTCATACGAGCGATCGGTGGAGAAGCGgtgcaacacg ... ttgtatgcagGGTGACCTAGCAAGGACAATACAGTCTGTGCTGTTCGTGAATGCGATCAAT
EST: CATCTGTGCTGATTCCACTCACTGTCATACGAGCGATCGGTGGAGAAGCG GGTGACCTANCAAGGACAATACAGTCTGTGCTGTTCGTGAATGCGATCAATEST: gi|100358287|gb|BY965567.1|BY965567
genomic: CATCTGTGCTGATTCCACTCACTGTCATACGAGCGATCGGTGGAGAAGCGgtgcaacacg ... ttgtatgcagGGTGACCTAGCAAGGACAATACAGTCTGTGCTGTTCGTGAATGCGATCAAT
EST: CATCTGTGCTGATTCCACTCACTGTCATACGAGCGATCGGTGGAGAAGCG GGTGACCTAGCAAGGACAATACAGTCTGTGCTGTTCGTGAATGCGATCAAT
genomic: CATCTGTGCTGATTCCACTCACTGTCATACGAGCGATCGGTGGAGAAGCGgtgcaacacg ... ttgtatgcagGGTGACCTAGCAAGGACAATACAGTCTGTGCTGTTCGTGAATGCGATCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGTCTATAATTCTAGGATTTCAGCACTATATTACCATGCTTGGCACATCTGTGCTGATTCCACTCACTGTCATACGAGCGATCGGTGGAGAAGCGgtgcaacacgagtcctactctttcacttagtacatttttttgtgtttttttgcttatgggtatttgtgcattttccatgaagcgcaacgagcagaaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC