1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGAAAAAAATTAGCGGTTTCGTCAAACAAGCAAACGAGTTTCTTGCAGAGCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTAgtaagctttctctaacttagtgaggggtgttttaccaactgccattattccatagcctttggatgttaatttcgacctgattatgggttgattaccatgaaaatgtatggttactaacaatcctcgtgcacatgtcatgttcag
species | Physcomitrella patens |
transcript | PP1S295_6V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGATGGAGACGGGATGA-TTTGTGCCTCCTGCAATGCGTGCAGGGCCTA GTACCCCANGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGEST: gi|162152799|gb|FC329805.1|FC329805
genomic: CAGATGGAGACGG-ATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTAgtaagctttc ... tcatgttcagGTACCCCA-GCTTATTTATTTGAAGGTCAGTTTCCTGTTGG
EST: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTA GTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAGEST: gi|100357878|gb|BY946619.1|BY946619
genomic: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTAgtaagctttc ... tcatgttcagGTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAG
EST: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTA GTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAGEST: gi|67569350|gb|BJ942174.1|BJ942174
genomic: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTAgtaagctttc ... tcatgttcagGTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAG
EST: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTA GTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAGEST: gi|67570400|gb|BJ943224.1|BJ943224
genomic: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTAgtaagctttc ... tcatgttcagGTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAG
EST: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTA GTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAGEST: gi|162275561|gb|FC451303.1|FC451303
genomic: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTAgtaagctttc ... tcatgttcagGTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAG
EST: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTA GTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAGEST: gi|208399505|gb|DC908502.1|DC908502
genomic: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTAgtaagctttc ... tcatgttcagGTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAG
EST: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTA GTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAGEST: gi|162270005|gb|FC446705.1|FC446705
genomic: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTAgtaagctttc ... tcatgttcagGTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAG
EST: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTA GTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAGEST: gi|67693675|gb|BJ953908.1|BJ953908
genomic: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTAgtaagctttc ... tcatgttcagGTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAG
EST: TGCAATGCGTGCAGGGCNTA GTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAGEST: gi|100447905|gb|CJ972204.1|CJ972204
genomic: TGCAATGCGTGCAGGGCCTAgtaagctttc ... tcatgttcagGTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAG
EST: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTA GTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAG
genomic: GCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTAgtaagctttc ... tcatgttcagGTACCCCAGCTTATTTATTTGAAGGTCAGTTTCCTGTTGGAGGAGGAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAAAAAAATTAGCGGTTTCGTCAAACAAGCAAACGAGTTTCTTGCAGAGCAGATGGAGACGGATGAATTTGTGCCTCCTGCAATGCGTGCAGGGCCTAgtaagctttctctaacttagtgaggggtgttttaccaactgccattattccatagcctttggatgttaatttcgacctgattatgggttgattaccatgaaaatgtatggttactaacaatcctcgtgcacatgtcatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA