1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTGCAACGCTGAAAGCCCCTTTGGAGTGGCGGACCTGAAGCAGTCTGAGCGAAGCTCCTTCGTTTCTCGTTGTGATGGGCTTGCTCTAAATCATGGAAGgtttggtgtttttattgattctattggctcacagttgctttgtgcatcataaatttctttcgagaattctagcaaggcttttcatgtcgcatttgacatgaagaacagtgtgcaatattaatcgagtttctgttgaacag
species | Physcomitrella patens |
transcript | PP1S286_16V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGAAGCTCCTTCGTTTCTCGTTGTGATGGGCTTGCTCTAAATCATGGAAG GGTGATTATGAATGCGGTGGACAGAATCGACTCTGATGAGGAGCTCCTGGAEST: gi|208375555|gb|DC940525.1|DC940525
genomic: CGAAGCTCCTTCGTTTCTCGTTGTGATGGGCTTGCTCTAAATCATGGAAGgtttggtgtt ... tgttgaacagGGTGATTATGAATGCGGTGGACAGAATCGACTCTGATGAGGAGCTCCTGGA
EST: CGAAGCTCCTTCGTTTCTCGTTGTGATGGGCTTGCTCTAANTCATGGAAG GGTGATTATGAATGCGGTGGACAGAATCGACTCTGATGAGGAGCTCCTGGAEST: gi|100438348|gb|BY979912.1|BY979912
genomic: CGAAGCTCCTTCGTTTCTCGTTGTGATGGGCTTGCTCTAAATCATGGAAGgtttggtgtt ... tgttgaacagGGTGATTATGAATGCGGTGGACAGAATCGACTCTGATGAGGAGCTCCTGGA
EST: CGAAGCTCCTTCGTTTCTCGTTGTGATGGGCTTGCTCTAAATCATGGAAG GGTGATTATGAATGCGGTGGACAGAATCGACTCTGATGAGGAGCTCCTGGA
genomic: CGAAGCTCCTTCGTTTCTCGTTGTGATGGGCTTGCTCTAAATCATGGAAGgtttggtgtt ... tgttgaacagGGTGATTATGAATGCGGTGGACAGAATCGACTCTGATGAGGAGCTCCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGCAACGCTGAAAGCCCCTTTGGAGTGGCGGACCTGAAGCAGTCTGAGCGAAGCTCCTTCGTTTCTCGTTGTGATGGGCTTGCTCTAAATCATGGAAGgtttggtgtttttattgattctattggctcacagttgctttgtgcatcataaatttctttcgagaattctagcaaggcttttcatgtcgcatttgacatgaagaacagtgtgcaatattaatcgagtttctgttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG