Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTAACCTACCGCGAAGTGGTTGCCATCGTGATGCAGCGCCTCATCTCCATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaacatttagatcatctttattgccatcgtagcgccaacattcgagccggccttttttattcttgacaatctcggaaccaaagtccacacattgcgtgttttaacctctttaatggagccataaagttttcttacaagatcaggtttatcatctgataaaaaaatgcag

Basic information

species Physcomitrella patens
transcript PP1S282_25V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ14824 (Selaginella moellendorffii), 5'ss of exon 3
GCCTTAACCTACCGCGAAGTGGTTGCCATCGTGATGCAGCGCCTCATCTCCATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaacatttagatcatctttattgccatcgtagcgccaacattcgagccggccttttttattcttgacaatctcggaaccaaagtccacacattgcgtgttttaacctctttaatggagccataaagttttcttacaagatcaggtttatcatctgataaaaaaatgcag
||||| || ||||| || ||||| || |||||||||||    |||||||| |||||||| ||||| || || ||||||||||| || || || ||||||||| |||    | | |||  |||||    |  |       |  || | |  |     ||||| ||                                                                                                              
GCCTTGACTTACCGAGAGGTGGTCGCAATCGTGATGCAAAAGCTCATCTCGATTGATGGCAAGGTCCGGACGGACAAGTGCTATCCCGCTGGATTCATGGgtaagt----tctcgatt-tcttttcctctcttacccgactgacttgcttgtttcgcttttctag-------------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162206404|gb|FC383397.1|FC383397
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|37853532|gb|BJ611540.1|BJ611540
EST:     CAAGTGNTACCNTGCCGGTTTCATGG                         ATGTCATNTCCATTGNTAAGACAAACGAGAACTTCCGTNTATTGTATGACA
genomic: CAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|67710125|gb|BJ965862.1|BJ965862
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162179274|gb|FC356223.1|FC356223
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|18367098|gb|BJ199178.1|BJ199178
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|18360158|gb|BJ192220.1|BJ192220
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|208381818|gb|DC923384.1|DC923384
EST:     CATTGATGG-AAGGTTCGAACTGACAAGTGNTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGNTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162259821|gb|FC435956.1|FC435956
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162190842|gb|FC368040.1|FC368040
EST:     GATGGAAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCA-TGCTAAAGACAAACGAGAACTCCCGTCTATTGTATGAC
genomic: GATGG-AAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCT-AAGACAAACGAGAACTTCCGTCTATTGTATGAC
EST: gi|19784064|gb|BQ040113.1|BQ040113
EST:     ATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: ATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162259820|gb|FC435955.1|FC435955
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|18330776|gb|BJ162782.1|BJ162782
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|7148076|gb|AW509998.1|AW509998
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162170017|gb|FC345070.1|FC345070
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162258718|gb|FC434517.1|FC434517
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162190843|gb|FC368041.1|FC368041
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|18368232|gb|BJ200317.1|BJ200317
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|208372562|gb|DC940809.1|DC940809
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162279161|gb|FC455500.1|FC455500
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|208354395|gb|DC953815.1|DC953815
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162258719|gb|FC434518.1|FC434518
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162280390|gb|FC456095.1|FC456095
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|13315379|gb|BG409034.1|BG409034
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|18371206|gb|BJ202808.1|BJ202808
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162263565|gb|FC438853.1|FC438853
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162280391|gb|FC456096.1|FC456096
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|18325295|gb|BJ157291.1|BJ157291
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162179273|gb|FC356222.1|FC356222
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162170018|gb|FC345071.1|FC345071
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162206405|gb|FC383398.1|FC383398
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|67724126|gb|BJ974385.1|BJ974385
EST:     CA-TGATNGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162263566|gb|FC438854.1|FC438854
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|18366461|gb|BJ198540.1|BJ198540
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|67572957|gb|BJ945781.1|BJ945781
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162200037|gb|FC376499.1|FC376499
EST:     AACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: AACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|67718208|gb|BJ968467.1|BJ968467
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|18327820|gb|BJ159824.1|BJ159824
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|67696339|gb|BJ956572.1|BJ956572
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGNTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|18325583|gb|BJ157580.1|BJ157580
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|162279160|gb|FC455499.1|FC455499
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|18366927|gb|BJ199007.1|BJ199007
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
EST: gi|208346219|gb|DC909525.1|DC909525
EST:     CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGG                         ATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA
genomic: CATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 30 (upstream exon), 34 (downstream exon)
Score: 7

GCCTTAACCTACCGCGAAGTGGTTGCCATCGTGATGCAGCGCCTCATCTCCATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaaca ... aaaaatgcagATGTCATCTCCATTGCTAAGACAAACGAGAACTTCCGTCTATTGTATGACAATAAGGGTCGTTTCACCCTCCACCACATCAGTGCTGAAGAAGCTAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTTAACCTACCGCGAAGTGGTTGCCATCGTGATGCAGCGCCTCATCTCCATTGATGGAAAGGTTCGAACTGACAAGTGCTACCCTGCCGGTTTCATGGgtgagtaacatttagatcatctttattgccatcgtagcgccaacattcgagccggccttttttattcttgacaatctcggaaccaaagtccacacattgcgtgttttaacctctttaatggagccataaagttttcttacaagatcaggtttatcatctgataaaaaaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA