1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGGGGGCAGACAATAATTTACTACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttattcctctgtcaatctttttcttaatatgcagtttgatataaggaaatgtctggtcaattcctttacttaaggaatcatgcaaggtttaccct...
species | Physcomitrella patens |
transcript | PP1S277_10V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162155413|gb|FC332027.1|FC332027
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162170376|gb|FC346781.1|FC346781
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|18327722|gb|BJ159725.1|BJ159725
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162151154|gb|FC327153.1|FC327153
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162198693|gb|FC373474.1|FC373474
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162168664|gb|FC343926.1|FC343926
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162176795|gb|FC352809.1|FC352809
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162166539|gb|FC343236.1|FC343236
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGGGCAGACAATAATTTACTACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttattcctctgtcaatctttttcttaatatgcagtttgatataaggaaatgtctggtcaattcctttacttaaggaatcatgcaaggtttaccct
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