1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAAGACGATCAATGGAGATGATTTACTTTGGGCCATGAGCACATTAGGGTTTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAGgtactttcgctgttatctgttcgctcctttctcaagacctgcttgactgctctatctttctcctacagtttggttacctttattttggtctgctcccgaa...
species | Physcomitrella patens |
transcript | PP1S25_89V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAG ACTGAGEST: gi|162273472|gb|FC449617.1|FC449617
genomic: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAGgtactttcgc ... tggcttccagACTGAG
EST: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAG ACTGAGEST: gi|208354191|gb|DC957411.1|DC957411
genomic: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAGgtactttcgc ... tggcttccagACTGAG
EST: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAG ACTGAGEST: gi|208361426|gb|DC935113.1|DC935113
genomic: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAGgtactttcgc ... tggcttccagACTGAG
EST: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAG ACTGAGEST: gi|162273471|gb|FC449616.1|FC449616
genomic: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAGgtactttcgc ... tggcttccagACTGAG
EST: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAG ACTGAGEST: gi|37828975|gb|BJ586987.1|BJ586987
genomic: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAGgtactttcgc ... tggcttccagACTGAG
EST: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAG ACTGAGEST: gi|208387454|gb|DC949239.1|DC949239
genomic: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAGgtactttcgc ... tggcttccagACTGAG
EST: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAG ACTGAG
genomic: TTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAGgtactttcgc ... tggcttccagACTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGACGATCAATGGAGATGATTTACTTTGGGCCATGAGCACATTAGGGTTTGAAGACTACGTCGAGCCGCTGAAGGTTTACCTTCACAAGTACAGAGAGgtactttcgctgttatctgttcgctcctttctcaagacctgcttgactgctctatctttctcctacagtttggttacctttattttggtctgctcccgaa
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG