Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag

Basic information

species Physcomitrella patens
transcript PP1S253_7V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 4
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||    || ||||| |  ||  |  | ||||| ||||   |      | |   |  |||   ||| |     || | ||  | |  |||    |||  || |    | | | |||  | | ||                                                                        
GGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaa----ggctctatttctattattgactttcggatat-tcatgcccttgct---ctgaccatattatgtt-acttgtatggcag------------------------------------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 5'ss of exon 4
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| ||||| |||||||| |||||||| || |||||||| |||||||| ||||||||||| || || ||    || ||||| |  ||  |  | ||||| ||||  ||| |  |    |||  ||  | ||| | | | || | ||   |   ||| | ||||    | | | | |    || |   | || || ||  |  ||| |                                                       
GGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGgta--gatgtttaagatgct--tacatttgaatgg-ttatgtttcattt---tgctttgctg----gcaggtgttctaatgtg--aatgttccatttttatactgacag----------------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G054136_T06 (Zea mays), 5'ss of exon 3
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtag-atcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| |||||||||||||| ||||| || || |||||||| || ||||| |||||||| |||||| | ||    || ||||| |  ||  || | || || ||||| || |    |  |  |    |||      || | ||| | |  |     | | |  |||  ||       || | ||  || |     || |   | |                                                            
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcc-tatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgat-atcaattctgtagggactccctgcttcc------------------------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 3
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtag-atcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| |||||||||||||| ||||| || || |||||||| || ||||| |||||||| |||||| | ||    || ||||| |  ||  || | || || ||||| || |    |  |  |    |||      || | ||| | |  |     | | |  |||  ||       || | ||  || |                                                                           
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcc-tatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgat-atcaattctgtag---------------------------------------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 4
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggata-taaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| |||||||||||||| ||||| || || |||||||| || ||||| |||||||| |||||| | ||    || ||||| |  ||  || | || || ||||| || | |    |   |  || |        | | ||| | |  |     | | |  |||  ||       || | ||  || |                                                                           
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatgtccagtgtactctca-acaccatcttttactctgattcttatctgaacattcgat-atcaattctgtag---------------------------------------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 4
---------GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
         || |||||||||||||| ||||| || || ||||| || || ||||| |||||||| |||||||| ||    || ||||| |  ||  || | |||||||||||  | |     |   |   | |                                                                                                                                        
GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATgtgacaaacaaggcttcccaatgaagcaaggagttctgacttctggtcgtgtccgccttctgctccacagaggtatatagactg-tatctccattgtactc------------------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggata-taaacacagctggtatgtctgagtagatcatttatcgcgt-cactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| |||||||||||||| ||||| || || ||||| || || ||||| |||||||| |||||||| ||    || ||||| |  ||  || | |||||||||||  | | |  |      | |||  ||| |  |   | | | |  | |    | | |  |||  ||       |||| ||| || |                                                                           
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtac-tctcaacaccccctcttttacctgtggttcttatctgaacatttgat-atgaattgtgtag---------------------------------------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA15G08210.1 (Glycine max), 5'ss of exon 4
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcc-tcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| ||||||||||| ||||  ||||||||||||||||| || || || |||||||| |||||  | || |  || ||||| |  |||||| |||| |||||| ||  |||    |   ||  | | | |  || ||| ||  ||  | |||      |   | || || |  |  | |  |    ||   ||  ||||                                                                
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctattctgaagccttttgt-tttctgttgattataaat-acatcataattattagtttgaagcattcattcaactcatgtgttttatatttggaat------------------------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA13G31130.1 (Glycine max), 5'ss of exon 5
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttat-cgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| ||||||||||| ||||  ||||||||||||||||| || || || |||||||| |||||  | || |  || ||||| |  |||||| |||| |||||||||  |||    |   ||  | | | |   | ||| ||  || |     | |   | | | || || |  |  | |  |    ||   ||  |||||                                                               
GGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtatgtctattctgaagccttttgtattttgct-gattataaatacatcctaattattagtt-tgaagcattcattcaactcacgtgttctatatttgaatt------------------------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| || || |||||||| |||||||| || |||||||| |||||||| ||||| || ||||||||||| | ||| ||||| |  || ||| | ||| ||||||      |  || |   || ||    |    || |  | | |    ||| |      |||||          | | ||  ||     |    ||  ||   | ||                                                      
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattatacagcttctctttttt-tcattaatcttctgtgt------tttttatttatgt---gatctggttattgtgtttag------------------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgta--tggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| || || |||||||| | ||| |||||||| ||||| |||||||| ||||||||||||||| | || | ||||||||| |  || ||| | ||| ||||||  |  | ||||   |   |  ||    |  |     ||| |||   |    ||  |   ||||          ||  ||||  |  | || | ||| | |     |   |  |                                               
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttg-----catctataatggatttgtatttgtgtgtgtgtg----tgttttgctgtagattaacattgtttcgtaatgggtgaacag---------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 4
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| ||||| |||||||| ||||| ||||| |||||||| || || || |||||||||||||| || || |  ||||||||    || ||| | || || |||  | | |     || | |   ||   | |  |        | | | | | | | |   | |    ||   |      || | |  | |||  || ||||  | | |   || |                                              
GGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGCTTCATAGGGgtgagtaaactgggactgttctaatccttaaaaactgatcacaacccttaagttcatatttttatgcaagttgggtctatgagatttattacactttatgc--ttatttgagcag----------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagat-catttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgat--gcactcagtacggccgcgaggttat-gattttcatctgtaacgactcttgcct-gttgtcgcag
|| ||||| ||||| || |||||||| || |||||||| || ||||| ||||||||||||||  | || |  || |||||    |||||| | || ||||||  |  | |         |||||| |  | || | | || | | | |  || | | ||    |  |||  |      |     | |||| |  |||     | ||   ||   |  ||   || || |||  |       |||   ||| |  | | |   ||||
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttgg-------tggtatattagtgttggtgcactgaccac--cattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgt--atggatataaacacagctg---gtatgtctgagt---agatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgag---------------ttgcgttgaagtacctttgatgcactcagtacggccgcgaggtt--atgattttcatctgtaacgactcttgcctgttgtcgcag
|| ||||| ||||| || |||||||| || |||||||| ||||| || |||||||||||||| || || | |||||| || || ||  || | |||||||||   | ||       ||  ||    | || | |   |   | |  ||| |  ||     |       |||   | |    ||  |               | || |||  ||   ||||   || || | |    | ||| | |  ||||   | ||  | |  | |  ||   || |    |||
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattt---tgcttgaacag

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| |||||||||||||| |||||||| || |||||| | || ||||||||||||||||| || ||||        |||||||  ||| || |  || ||||||       ||||   |||  | | |         || ||| || |      |    | | ||      | ||  ||                                                                                   
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgta-------aaacgatgcttcttttt---------tcttttctccctctttcgttctgatttgagattcgtgaccag-----------------------------------------------------------------------------------

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ26393 (Selaginella moellendorffii), 5'ss of exon 3
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag
|| |||||||||||||| |||||||| || |||||| | || ||||||||||||||||| |||||||        |||||||  ||| || |  || ||||||       ||||   |||  | | |         || ||| || |      |    | | ||      | ||  ||                                                                                   
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgta-------aaacgatgcttcttttt---------tcttttctccctctttcgttctgatttgagattcgtgaccag-----------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208389914|gb|DC937745.1|DC937745
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|18358411|gb|BJ190470.1|BJ190470
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|67572029|gb|BJ944853.1|BJ944853
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|162238216|gb|FC414302.1|FC414302
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|162208309|gb|FC384621.1|FC384621
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|67720727|gb|BJ970986.1|BJ970986
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|67577618|gb|BJ949785.1|BJ949785
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|18371412|gb|BJ203014.1|BJ203014
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|67702716|gb|BJ962949.1|BJ962949
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|100412712|gb|BY974870.1|BY974870
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|208372876|gb|DC956277.1|DC956277
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|67702230|gb|BJ962463.1|BJ962463
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTT
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTT
EST: gi|67704565|gb|BJ964798.1|BJ964798
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|18344515|gb|BJ176556.1|BJ176556
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|162258931|gb|FC435874.1|FC435874
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|162230562|gb|FC407152.1|FC407152
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|208395264|gb|DC916073.1|DC916073
EST:     TGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCA-GGGGTAC-GGAGGCGCAAC-GGGAGCGGAGGCGCN
genomic: TGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|162233727|gb|FC409993.1|FC409993
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|7207694|gb|AW561691.1|AW561691
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCATGGGGTACTGGAGGCGCAACAGGGAGCGGACGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|208362859|gb|DC950809.1|DC950809
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|208385764|gb|DC932708.1|DC932708
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|162230561|gb|FC407151.1|FC407151
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|208363727|gb|DC954698.1|DC954698
EST:     GCAGCTC-TGATGCACAGA-                         GGGTCTCTTG-NTCA-GGGGTAC-GGAGGCGCAAC-GGGAGCGGAGGCGCA
genomic: GCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|162216309|gb|FC392102.1|FC392102
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|208345545|gb|DC909235.1|DC909235
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|208351869|gb|DC913782.1|DC913782
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|18359133|gb|BJ191193.1|BJ191193
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|100352755|gb|BY945432.1|BY945432
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|208358888|gb|DC935218.1|DC935218
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|208357938|gb|DC938823.1|DC938823
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|208378835|gb|DC927537.1|DC927537
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|162238217|gb|FC414303.1|FC414303
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|162233728|gb|FC409994.1|FC409994
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|208372029|gb|DC936229.1|DC936229
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|162201194|gb|FC377701.1|FC377701
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|37852539|gb|BJ610547.1|BJ610547
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|162278464|gb|FC454550.1|FC454550
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|162169173|gb|FC345140.1|FC345140
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
EST: gi|208388058|gb|DC941697.1|DC941697
EST:     GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAG                         GGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA
genomic: GAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 64

GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatat ... gttgtcgcagGGGTCTCTTGCTTCAGGGGGTACGGGAGGCGCAACGGGGAGCGGAGGCGCAAGTCTGTGAGGGGATGCATCGTTAGCCCAGACCTCTCGGTTTTGAACCT




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC