1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAGCTGAGGCAGCAAGGATCCGTGACAAGTATCCTGACAGAATTCCTGTAATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtttgtgttctttttgtaacgagcttgacattattttcctttcatattttggggttgagtctgattggtttcgttttgtttggggcctaaataattttagttcgtgcgcactgaattgtggcacgttctttgaattgatatgaggaacgcctgtgtag
species | Physcomitrella patens |
transcript | PP1S249_49V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACATTTCAGACATAGCCAAGAAAAA GTCCCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTTTACGTCATAAGEST: gi|162201747|gb|FC377499.1|FC377499
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAA GTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAGEST: gi|162265957|gb|FC442960.1|FC442960
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACTTTTCAGACATAGCCAAGAAAAA GTCCCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTTTACGTCATAAGEST: gi|22132370|gb|BQ827117.1|BQ827117
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAA GTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAGEST: gi|37845489|gb|BJ603497.1|BJ603497
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAA GTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAGEST: gi|19788925|gb|BQ041001.1|BQ041001
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAA GTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAGEST: gi|162269518|gb|FC445074.1|FC445074
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAA GTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAGEST: gi|208372756|gb|DC952643.1|DC952643
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAA GTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAGEST: gi|162269519|gb|FC445075.1|FC445075
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAA GTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAGEST: gi|37823882|gb|BJ581948.1|BJ581948
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAA GTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAGEST: gi|162237156|gb|FC413523.1|FC413523
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAA GTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAGEST: gi|7583876|gb|AW699778.1|AW699778
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAA GTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAGEST: gi|22492458|gb|BU052381.1|BU052381
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
EST: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAA GTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
genomic: ATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtt ... gcctgtgtagGTACCTTGTGCCAGCCGACTTGACGGTTGGGCAGTTTGTCTACGTCATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTGAGGCAGCAAGGATCCGTGACAAGTATCCTGACAGAATTCCTGTAATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtttgtgttctttttgtaacgagcttgacattattttcctttcatattttggggttgagtctgattggtttcgttttgtttggggcctaaataattttagttcgtgcgcactgaattgtggcacgttctttgaattgatatgaggaacgcctgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA