1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGCATTCAAGAAGGACAACAGCGACAAGAAATTGAATCTAGGAGTAGGCGCTTATCGTACAGAAGAGCTCCAGCCTTATGTGTTGGAGGTTGTAAAGAAGgtaattaatccctcagtctgacaatatgcactcaggtgtagctcgtgcacagacctgatttttctgagcacgtgactccatctttcaaagacaaaggtgc...
species | Physcomitrella patens |
transcript | PP1S245_98V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTATCGTACAGAAGAGCTCCAGCCTTATGTGTTGGAGGTTGTAAAGGAG GCCGAGAAGAAGATGCTGGAAGGTGGTGACAACAAAGAGEST: gi|100360663|gb|BY965570.1|BY965570
genomic: CTTATCGTACAGAAGAGCTCCAGCCTTATGTGTTGGAGGTTGTAAAGAAGgtaattaatc ... ctttgtacagGCCGAGAAGAAGATGCTGGAAGGTGGTGACAACAAAGAG
EST: CTTATCGTACAGAAGAGCTCCAGCCTTATGTGTTGGAGGTTGTAAAGAAG GCCGAGAAGAAGATGCTGGAAGGTGGTGACAACAAAGAG
genomic: CTTATCGTACAGAAGAGCTCCAGCCTTATGTGTTGGAGGTTGTAAAGAAGgtaattaatc ... ctttgtacagGCCGAGAAGAAGATGCTGGAAGGTGGTGACAACAAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCATTCAAGAAGGACAACAGCGACAAGAAATTGAATCTAGGAGTAGGCGCTTATCGTACAGAAGAGCTCCAGCCTTATGTGTTGGAGGTTGTAAAGAAGgtaattaatccctcagtctgacaatatgcactcaggtgtagctcgtgcacagacctgatttttctgagcacgtgactccatctttcaaagacaaaggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagacaa