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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttggagttctttcgtctgcgtgaaccagaacttcgtccatttttctgcgttttcctttttacgatttaaattgcagactcgtttgtgagtgat...

Basic information

species Physcomitrella patens
transcript PP1S243_27V6.5
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100410611|gb|BY992184.1|BY992184
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|162269880|gb|FC445397.1|FC445397
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|100384546|gb|BY987405.1|BY987405
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|100426595|gb|BY977307.1|BY977307
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|18330405|gb|BJ162411.1|BJ162411
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|208397735|gb|DC912532.1|DC912532
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         NTCNTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|100354259|gb|BY945787.1|BY945787
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|100407208|gb|BY974056.1|BY974056
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|100422036|gb|BY957830.1|BY957830
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|67709320|gb|BJ965136.1|BJ965136
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|100440883|gb|BY962371.1|BY962371
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|100445033|gb|BY964332.1|BY964332
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|100354013|gb|BY983424.1|BY983424
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|208354965|gb|DC914229.1|DC914229
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|100411934|gb|BY992412.1|BY992412
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|162232054|gb|FC409128.1|FC409128
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|67571756|gb|BJ944580.1|BJ944580
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|100353507|gb|BY964841.1|BY964841
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|100420723|gb|BY993477.1|BY993477
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|208382440|gb|DC927974.1|DC927974
EST:     CCATTTC-TTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
EST: gi|100413878|gb|BY975018.1|BY975018
EST:     CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGG                         GTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA
genomic: CCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttg ... gctttgacagGTCTTCTAACGACAGTTGCCCTAACTGCTCTCGTTACTGACGCGATCAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTATCGCTCTACTAGTCCCATTGTTTTTCATTTTCGTCCATTTCTTTCACCGAAGAAGCGTCCGCGACTTGCATCATGCGTTTCTGGgtacggcttggagttctttcgtctgcgtgaaccagaacttcgtccatttttctgcgttttcctttttacgatttaaattgcagactcgtttgtgagtgat

- - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC