Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGAAAGAAAGACCACAAGGATGGTCGCTACTCCCAGGTCGTGTCCAACGCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaaattctttttctaattgttgttgatgtacgcatattgtatcacaggctgttttaagctgctgctgtcagcgttagtctaatgttcctatga...

Basic information

species Physcomitrella patens
transcript PP1S242_94V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA02G08690.1 (Glycine max), 5'ss of exon 3
ACAGAAAGAAAGACCACAAGGATGGTCGCTACTCCCAGGTCGTGTCCAACGCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgt-atccacaaattctttttctaattgttgttga--tgtacgcatattgtatcacaggct--gtttta--agctgctgctgtcagcgttagtctaatgttcctatga
| || ||||||||| ||||||||||    || || ||||| ||||| || ||  ||||||||||||||||||||||| | || || |||||||| ||||||| || ||        |||     ||| ||||||  | ||     |||  || | | | |  ||  ||  ||  | | || |     || |  ||    |       
ATAGGAAGAAAGACTACAAGGATGGGAAGTATTCTCAGGTGGTGTCAAATGCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAGgtgattcattgtcgtatttgtatcttgatgttgaattttaatagaattaaattaaaagtttggtactaggagtggtttctttttttattggattatgaat-------

upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv05s0020g03450.t01 (Vitis vinifera), 5'ss of exon 3
ACAGAAAGAAAGACCACAAGGATGGTCGCTACTCCCAGGTCGTGTCCAACGCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgta-tccacaaattctttttcta--attgttgttgatgtacgcatattgtatcacaggctgttttaagctgctgctgtcagcgttagtctaatgttcctatga
|||| ||||||||  |||| |||||| | || || ||||| || || || || ||||| |||||| | ||||||||||| || |||||||||||||||||||| ||||    || ||  ||||  | | || |   | |  | | |   |    ||   | ||||       | |    |  || | || ||| | | | |  
ACAGGAAGAAAGATTACAAAGATGGTAGATATTCTCAGGTTGTTTCTAATGCATTGGACATGAAGCTCAGGGATGATCTTGAGCGTTTGAAGAAGATCAGgtaatccatccttttttcatctattacttttatcactctttgaagaacatggtgcaatttttttttcataaattcc--taaagtca-tcaaatttgcattttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67723490|gb|BJ973749.1|BJ973749
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|162270454|gb|FC447570.1|FC447570
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|208388454|gb|DC945646.1|DC945646
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|37824857|gb|BJ582923.1|BJ582923
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67719459|gb|BJ969718.1|BJ969718
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|208348604|gb|DC913262.1|DC913262
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|208377348|gb|DC906631.1|DC906631
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|162216885|gb|FC392222.1|FC392222
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67709415|gb|BJ965231.1|BJ965231
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67728071|gb|BJ978330.1|BJ978330
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|162267680|gb|FC443462.1|FC443462
EST:     GCCTTGGATATGGAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|162241838|gb|FC418093.1|FC418093
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67692173|gb|BJ952406.1|BJ952406
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|18345778|gb|BJ177821.1|BJ177821
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|162228034|gb|FC405655.1|FC405655
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67718008|gb|BJ968267.1|BJ968267
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|162222064|gb|FC398631.1|FC398631
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|208377306|gb|DC927022.1|DC927022
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67697377|gb|BJ957610.1|BJ957610
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67698290|gb|BJ958523.1|BJ958523
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|208395095|gb|DC920508.1|DC920508
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|162266888|gb|FC443002.1|FC443002
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|162264380|gb|FC440546.1|FC440546
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67719129|gb|BJ969388.1|BJ969388
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|37835040|gb|BJ593052.1|BJ593052
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67727741|gb|BJ978000.1|BJ978000
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67568960|gb|BJ941784.1|BJ941784
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|162241839|gb|FC418094.1|FC418094
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|162267681|gb|FC443463.1|FC443463
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|7067414|gb|AW497269.1|AW497269
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67722931|gb|BJ973190.1|BJ973190
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67574864|gb|BJ947688.1|BJ947688
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCNAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|208365082|gb|DC931132.1|DC931132
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67573988|gb|BJ946812.1|BJ946812
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|7583764|gb|AW699669.1|AW699669
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67726563|gb|BJ976822.1|BJ976822
EST:     GCCTNGGATANGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67704416|gb|BJ964649.1|BJ964649
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|162228035|gb|FC405656.1|FC405656
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67726509|gb|BJ976768.1|BJ976768
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|162270453|gb|FC447569.1|FC447569
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67720399|gb|BJ970658.1|BJ970658
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|37824890|gb|BJ582956.1|BJ582956
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67727442|gb|BJ977701.1|BJ977701
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|67719094|gb|BJ969353.1|BJ969353
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|7583085|gb|AW699249.1|AW699249
EST:     GAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
EST: gi|18345743|gb|BJ177786.1|BJ177786
EST:     GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA
genomic: GCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 24 (downstream exon)
Score: 10

ACAGAAAGAAAGACCACAAGGATGGTCGCTACTCCCAGGTCGTGTCCAACGCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaa ... attattgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGAGTACGCGGACAGCACACAAAGACTACTGGACGGCGTGGAAGGACCGTCGGTGTGTCCAAGAAG




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGAAAGAAAGACCACAAGGATGGTCGCTACTCCCAGGTCGTGTCCAACGCCTTGGATATGAAGTTGAGGGATGATCTCGAACGTTTGAAGAAGATCAGgtatccacaaattctttttctaattgttgttgatgtacgcatattgtatcacaggctgttttaagctgctgctgtcagcgttagtctaatgttcctatga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA