1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAGgtgattttatcttgtgtggacacgagaattgttgcttgctgagaagttgcgatccccctcgaagttttaagatctttctccttttttatagttttgcatcgtcccgcctaagtcccgacgtgaataacctgtgaaccgcctttataatgcag
species | Physcomitrella patens |
transcript | PP1S241_40V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAG GTAGCTATTGTTGTAGGAGGTGGTAATTTCTTCCGAGGAGCAAGCTGGGTTEST: gi|162189095|gb|FC365213.1|FC365213
genomic: CAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAGgtgattttat ... tataatgcagGTAGCTATTGTTGTAGGAGGTGGTAATTTCTTCCGAGGAGCAAGCTGGGTT
EST: CAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAG GTAGCTATTGTTGTAEST: gi|208365430|gb|DC950897.1|DC950897
genomic: CAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAGgtgattttat ... tataatgcagGTAGCTATTGTTGTA
EST: CAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAG GTAGCTATTGTTGTAGGAGGTGGTAATTTCTTCCGAGGAGCAAGCTGGGTTEST: gi|100373420|gb|BY949317.1|BY949317
genomic: CAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAGgtgattttat ... tataatgcagGTAGCTATTGTTGTAGGAGGTGGTAATTTCTTCCGAGGAGCAAGCTGGGTT
EST: CAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAG GTAGCTATTGTTGTAGGNAG-TGGTAATTTCTTCCCGAGNAGCA-GCTGGG
genomic: CAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAGgtgattttat ... tataatgcagGTAGCTATTGTTGTAGG-AGGTGGTAATTTCTTCC-GAGGAGCAAGCTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCACAATGGCAATTGCTCGAGAAGTAGCAGCCATAACACGATTGGGTGTGGAGgtgattttatcttgtgtggacacgagaattgttgcttgctgagaagttgcgatccccctcgaagttttaagatctttctccttttttatagttttgcatcgtcccgcctaagtcccgacgtgaataacctgtgaaccgcctttataatgcag
- - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - GTGGAG