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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCCAGCAAAGTTTGAGCTCCTCACCAGACGGAAAGGTCATAATAAAGTCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAGgtgagacgcctttcttatgtgaactttgttattttgtgtgaagatttggggtcagctttggaagcctttttccaagggagtagattcttcttgaatatta...

Basic information

species Physcomitrella patens
transcript PP1S23_46V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162193399|gb|FC368911.1|FC368911
EST:     TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAG                         GTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
genomic: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAGgtgagacgcc ... gtgtgcacagGTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
EST: gi|162163476|gb|FC340010.1|FC340010
EST:     TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAG                         GTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
genomic: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAGgtgagacgcc ... gtgtgcacagGTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
EST: gi|162161664|gb|FC339079.1|FC339079
EST:     TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAG                         GTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
genomic: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAGgtgagacgcc ... gtgtgcacagGTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
EST: gi|162265839|gb|FC442426.1|FC442426
EST:     TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAG                         GTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
genomic: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAGgtgagacgcc ... gtgtgcacagGTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
EST: gi|162205183|gb|FC381281.1|FC381281
EST:     TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAG                         GTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
genomic: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAGgtgagacgcc ... gtgtgcacagGTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT