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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacaggagagattcgcccatcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacag

Basic information

species Physcomitrella patens
transcript PP1S237_14V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 4
GCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacaggagagattcgcccatcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacag
|| || |||||| | ||||| || ||||| |||||||||||||| ||||||||  |||| ||||| |||||||| |||||||| |  ||||| ||||| ||||        |   |||| || |   ||||| |  | |  | |     |        || || || |  | ||| |    |||                                                                          
GCAACTGAGGAGCTCTGCAAGCACTACACCAAGGACTTTGGCATTGAGTGCCGTGTTGGCCGCTTCCACAACATATATGGCCCCTTTGGAACATGGAAAGgtagaagtttaaccaattctccaa--gttattgaactgt--acttgtactggggcatccttaactcaatttgtcaatgg-atag--------------------------------------------------------------------------

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 4
GCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacaggagagattcgcccatcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacag
|| ||||||||| ||||||| || ||||| |||||||||||||| ||||||||| | || ||||| |||||||| || ||||| | |||||| ||||| ||| |                || |  |  | |    |      |  || | |  | ||  |||  | | |      |||   | |  | | |  |||| | |                                                        
GCAACCGAGGAGCTGTGCAAGCACTACACCAAGGACTTTGGCATCGAGTGCCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaa---------------cctactaccagttttctgggctgtggctgtgaggtcataacaatccaacggcctgataaaaaaat--gctctctttgtctatcag-----------------------------------------------------

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G138907_T01 (Zea mays), 5'ss of exon 4
GCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacaggagagattcgcccatcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacag
|| || |||||| ||||||| || || || ||||| |||||||| |||||||| |||||||||||||||||||| ||||| || | ||| || ||||| ||| |||      |  ||  |      | || | | |||   | |   ||     |  | || | |     | |   | | || |||  ||||  || |   ||| |   ||                                               
GCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACAACATATATGGTCCCTTCGGCACATGGAAAGgtcagttt----gctatctggtagctagtagt-attttgccagttctttgttggtgctatcgattt----tctagatgacgttgtcctatgt--ttattgcttggcaatatag---------------------------------------------

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv05s0020g04510.t01 (Vitis vinifera), 5'ss of exon 4
GCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaag--tacaggagagattcgcccatcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacag
|| || |||||||| ||||| || ||||| ||||||||||| || ||||| |||||||| || || || || || ||||| || |  ||||| ||||| ||| ||  | ||   |  ||||       || ||    |||  |  | || ||     | | ||              |||||  |           || |||||  ||||  | | || | |                                      
GCAACTGAGGAGTTATGCAAGCACTACACTAAGGACTTTGGAATTGAGTGTCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgcaattgtaattccgtttggatgatggtttttccttctttccttttgggtgtttc------------tgttaataca-----------ttttgtttctcctttttccattatag--------------------------------------

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 3
GCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacaggagagattcgcccatcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacag
  ||| || ||| ||||||| || ||||| ||||| ||||| || |||||||||||||| || || |||||||| ||||| || |  || |||||||| ||| ||| ||    |||||      |  || ||  ||| ||||  ||   |     || || | || |    |  |  |                                                                                
TGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACAACATCTATGGGCCCTTTGGGACCTGGAAAGgtgagttca---tagattgagatcttcttcttt-cttctttagcctgagtgggagtaactgagattgtttcaaaaccag-------------------------------------------------------------------------------

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 3
GCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacaggagagattcgcc-catcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacag
  |||||| ||| ||||||| || ||||| ||||||||||| || |||||||| ||||| ||||| |||||||| || || || |  || |||||||| ||| ||   ||          |  | || || ||| |||  |  |    |  |   | ||     |  ||   |||  |     ||                                                                          
TGCACCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACAACATCTACGGGCCTTTTGGTACCTGGAAAGgtgagcttagattcttggaacttcctctttcttctcttgctcgaagcttagagtgtgatgggtgactgacaaatcgatctcacag--------------------------------------------------------------------------

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ18599 (Selaginella moellendorffii), 5'ss of exon 3
GCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacaggagagattcgcccatcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacag
  ||| || ||| ||||||| || ||||| ||||| ||||| || |||||||||||||| || || |||||||| ||||| || |  || |||||||| ||| | | ||    |||||      |  || ||  ||| ||||   |   |     || || | || |    |  |  |                                                                                
TGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACAACATCTATGGACCCTTTGGGACCTGGAAAGgtgacttca---tagattgagatcttcttcttt-cttctttagcttgagtgggagtaactgagattgtttcaataccag-------------------------------------------------------------------------------

upper sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ10353 (Selaginella moellendorffii), 5'ss of exon 3
GCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacaggagagattcgcccatcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacag
  ||| || ||| ||||||| || ||||| ||||| ||||| || |||||||||||||| || || |||||||| ||||| || |  ||||||||||| ||| ||| ||    |||||      |  ||  |  ||| ||||  ||   |     || || | || |    |  |  |                                                                                
TGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACAACATCTATGGACCCTTTGGAACCTGGAAAGgtgagttca---tagattgagatcttctt-cttgcttctttagcctgagtgggagtaactgagattgtttcaaaaccag-------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18332917|gb|BJ164930.1|BJ164930
EST:     CGCATTGGTCGCTTTCACAACATTTATGGCCCATACGATAACCTGGAAGG                         GTGGGCGTGAGAAGGCANCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CGCATTGGTCGCTTTCACAACATTTATGGCCCATACG-GAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162219883|gb|FC396698.1|FC396698
EST:     CAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162165131|gb|FC341139.1|FC341139
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162207083|gb|FC382197.1|FC382197
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162184537|gb|FC360011.1|FC360011
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162154863|gb|FC331905.1|FC331905
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|37850522|gb|BJ608530.1|BJ608530
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162242164|gb|FC418416.1|FC418416
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162228992|gb|FC404221.1|FC404221
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|37821379|gb|BJ579445.1|BJ579445
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|100449002|gb|CJ973301.1|CJ973301
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAANG                         GTGGGCCGTGAGA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGC-GTGAGA
EST: gi|162263399|gb|FC438622.1|FC438622
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162154656|gb|FC331594.1|FC331594
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGGAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|7286960|gb|AW599447.1|AW599447
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162197191|gb|FC374168.1|FC374168
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162223643|gb|FC399741.1|FC399741
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|67718099|gb|BJ968358.1|BJ968358
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCA
EST: gi|67508095|gb|BJ940966.1|BJ940966
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACNGAACCTGGAAGG                         GTGGGCGTGAGA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGA
EST: gi|162175896|gb|FC351574.1|FC351574
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCT
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCT
EST: gi|162258586|gb|FC434801.1|FC434801
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162247781|gb|FC423400.1|FC423400
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|18328178|gb|BJ160182.1|BJ160182
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|100385036|gb|BY987499.1|BY987499
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162272922|gb|FC448858.1|FC448858
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162184117|gb|FC358863.1|FC358863
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162215665|gb|FC391705.1|FC391705
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162169848|gb|FC346204.1|FC346204
EST:     CGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162190218|gb|FC366376.1|FC366376
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGCAGG                         GTGGGCGTGAGAAGGCACCCCNGC-GCCT-CTGCAGAAAG-CCTTGACAGC
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCC--GCCGCCTTCTGCAGAAAGGCCTTGACAGC
EST: gi|162215937|gb|FC392354.1|FC392354
EST:     CCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162190271|gb|FC366429.1|FC366429
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGC
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGC
EST: gi|162150224|gb|FC326309.1|FC326309
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162201901|gb|FC376899.1|FC376899
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGC
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGC
EST: gi|162208740|gb|FC384876.1|FC384876
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAAGCACCCGCCGCCTTCTGCAG
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAG
EST: gi|162162668|gb|FC338970.1|FC338970
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162161530|gb|FC338737.1|FC338737
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162187337|gb|FC363495.1|FC363495
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|19788591|gb|BQ040802.1|BQ040802
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162192021|gb|FC367234.1|FC367234
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162153911|gb|FC329418.1|FC329418
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162245933|gb|FC419677.1|FC419677
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: gi|162157309|gb|FC333138.1|FC333138
EST:     CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG                         GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAG
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 40

GCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCACCGAGCATTTCGAGATGTGGGGCGATGGCAAGCAAACTCGCTCCTTCAC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacaggagagattcgcccatcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG