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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGAGGGTATGGAGCGCAAGGATGTGATGTCCAAAAATGTTTCCATCTACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttcgtcataaattcataagcgcgatatatgtgactttattttgaatgtaaggctaaattcatgcattcacatatggtcctataattgctgtga...

Basic information

species Physcomitrella patens
transcript PP1S235_81V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S235_81V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os10g33800.3 (Oryza sativa), 5'ss of exon 3
CAAGGAGGGTATGGAGCGCAAGGATGTGATGTCCAAAAATGTTTCCATCTACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttcgtcataaattcataagcgcgatatatgtgactttattttgaatgtaaggctaaattcatgcattcacatatggtcctata-attgctgtga
 |||||||| |||||  | |||||||| ||||| |||||||| |||||||||||| | || || || || ||||||   || || ||     |   ||||||| |      |   ||||  |     || || ||    | |   | |  | |     ||     ||   | || |       ||  ||  | |||| | |
GAAGGAGGGAATGGAAAGGAAGGATGTTATGTCAAAAAATGTCTCCATCTACAAATCCCAAGCTTCTGCTCTTGAGGCTCATGCAGCCCCTAACTGCAAGgtatggaaatatttcaaatgta-gtttgcaatttactgcaatgattgtcaagttgccagcattgctctcaccttgagtagcaatcacatgtaatgctataa

upper sequence: PP1S235_81V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA13G16440.1 (Glycine max), 5'ss of exon 3
CAAGGAGGGTATGGAGCGCAAGGATGTGATGTCCAAAAATGTTTCCATCTACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttcgtcataaattcataagcgcgatatatgtgactttattttgaatgtaaggctaaattcatgcattcacatatggtcctataattgctgtga
 ||||| || |||||  | || ||||||||||| |||||||| || || || || |||||||| |||||||| |||||||| ||||||| ||||   |||||  |         |       ||      ||   ||||  || |||||||||   |     ||   ||   |     ||    |  |  | |  | |||
AAAGGAAGGAATGGAAAGAAAAGATGTGATGTCTAAAAATGTATCAATTTATAAGGCTCAGGCTTCAGCACTAGAGCAGCATGCTGCAACAGATTGTAAGgttagaaactactttgtcactctatttagaattagtgtgttttaattttgaataccattgacaacatattactatttctaaaaacaaaatacttatatga

upper sequence: PP1S235_81V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT1G04410.1 (Arabidopsis thaliana), 5'ss of exon 3
CAAGGAGGGTATGGAGCGCAAGGATGTGATGTCCAAAAATGTTTCCATCTACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGC--------AAAAGATGTCAAGgtaggtgttcgtcataaattca-taagcgcgatatatgtgactttat-------tttgaatgtaaggctaaattcatgcattcacatatggtccta--taattgctgtga----------------------------------------
 || || ||||||||| | ||||||||||||||||| |||||||||||||||||  |||||||  | ||  | ||| |||| || ||          ||| ||  | | |  || | | |  ||| || | | |   |  |  ||   |  || |       || || |||||       ||  ||   ||  ||  ||| |||  | |   || |                                          
GAAAGAAGGTATGGAGAGGAAGGATGTGATGTCCAAGAATGTTTCCATCTACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgatctgtttgctttttaagttaaatgaagccactgcatccaatcttctctgttcattggagtgtaacagatgctttgtgttctc-tattgggttctagtttacgactctcttgctcacacattcgctctcgttttgtcttttttttttcag

upper sequence: PP1S235_81V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv07s0005g03350.t01 (Vitis vinifera), 5'ss of exon 4
CAAGGAGGGTATGGAGCGCAAGGATGTGATGTCCAAAAATGTTTCCATCTACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttcgtcataa-attcataagcgcgatatatgtgactttattttgaatgtaaggctaaattcatgcattcacatatggtcctataattgctgtga--------------------------------------------------------------------------------------------------
 || || || |||||  | || ||||||||||||||||||||||||||||||||  |||||||||| ||||||||  | || || ||   | ||  |||||| | ||    | |||  ||   |          |   |||    ||  || |  | ||   | ||| |  ||     |||    ||    | | || | |                                                                                                  
GAAAGAAGGAATGGAAAGGAAAGATGTGATGTCCAAAAATGTTTCCATCTACAAGTCTCAGGCCTCTGCACTTGAAAATCATGCAGCTGCAAATTGCAAGgt-gctgaagattatatcatgtttcgaattttctttcttgataaaatcatgcacttgagtgaagattgaaccaccttaatagttaccagggaatacttttacttggaagtgacccacactccttggccaatgcttctttcttttcttctgtgtttttccaatcaattttatttattattcattcattcatttatttcag

upper sequence: PP1S235_81V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv07s0005g03360.t01 (Vitis vinifera), 5'ss of exon 3
CAAGGAGGGTATGGAGCGCAAGGATGTGATGTCCAAAAATGTTTCCATCTACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgta--ggtgttcgt---cataaattcataagcgcgatatatgtgactttatt-ttgaatgtaaggctaaattcatgcattc------acatatggtcctataattgctgtga----------------------------------------------------------------------------------
 || || || |||||  | |||||||||||||||||||||||||||||||||||  | |||||||| ||||||||  | || || ||   | ||  ||||||      | | ||     |   ||||    |  |||| |     |    |  |||||  |    | |  || |||  | |      | |  |   | || ||||    ||                                                                                   
AAAAGAAGGAATGGAAAGAAAGGATGTGATGTCCAAAAATGTTTCCATCTACAAGTCCCAGGCCTCTGCACTTGAAAATCATGCAGCTGCAAATTGCAAGgtgctcacgattgtatattttgtttcaattccttgataaaatcatccacttgattgaacattgaaccaccttaatggttaccggggaatacttttacatagaattaacctgcattacttggccaatgcttctttcttttcttttgtgtttttccaatcaattttatttattattcattcattcatttatttcag

upper sequence: PP1S235_81V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ10745 (Selaginella moellendorffii), 5'ss of exon 3
CAAGGAGGGTATGGAGCGCAAGGATGTGATGTCCAAAAATGTTTCCATCTACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttcgtcataaattcataagcgcgatatatgtgactttattttgaatgtaaggctaaattcatgcattcacatatggtcctataattgctgtga
 ||||| || |||||||| |||||||| |||||||| || || |||||||||||  |||| || || || |||||  ||   ||||| || || || ||||||      ||| | |||| || || ||    | | |   | | | | ||   || |                                           
GAAGGAAGGGATGGAGCGAAAGGATGTCATGTCCAAGAACGTCTCCATCTACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaa-----cgt-agaaataca-aaacgtatcagaagct-catgactgtgggcgtgacag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208388443|gb|DC957053.1|DC957053
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208391778|gb|DC942326.1|DC942326
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208376997|gb|DC936775.1|DC936775
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208377742|gb|DC940854.1|DC940854
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208373893|gb|DC956353.1|DC956353
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208371973|gb|DC951950.1|DC951950
EST:     CTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: CTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208391921|gb|DC949384.1|DC949384
EST:     TCAGCACTTGAGCAGCACGNTGCAAAAGATGTCAAG                         GTTTTNGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: TCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208393455|gb|DC942525.1|DC942525
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|100402731|gb|BY973330.1|BY973330
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCANAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGGAAG-A
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTG-AAGGA
EST: gi|208376635|gb|DC932099.1|DC932099
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208381368|gb|DC927804.1|DC927804
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208376961|gb|DC936767.1|DC936767
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|162189940|gb|FC366124.1|FC366124
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208366313|gb|DC943845.1|DC943845
EST:     TCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: TCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|100426307|gb|BY958832.1|BY958832
EST:     ACAAAGCTCAGGTCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCCAGCAA-CACCAATGCCCTGATCTTGAAGGA
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCC-AGCAAACACCAATGCCCTGATCTTGAAGGA
EST: gi|162239969|gb|FC414846.1|FC414846
EST:     CAAAGCTCAGGCCTCAGCAC-TGAGGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: CAAAGCTCAGGCCTCAGCACTTGA-GCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208388435|gb|DC957045.1|DC957045
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208381674|gb|DC915540.1|DC915540
EST:     AC-AAGCTCANGCCTCAGCAC-TGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|162275595|gb|FC451623.1|FC451623
EST:     ACAAAGCTCAGGCCTCAGTACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208367844|gb|DC955321.1|DC955321
EST:     AGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: AGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208370195|gb|DC952017.1|DC952017
EST:     ACAAAGCTCAGGCNTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|100392117|gb|BY953202.1|BY953202
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208361508|gb|DC950266.1|DC950266
EST:     TGAGCAGCACGNTGCAAAAGATGTCAA-                         GTCTT-GT-GTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: TGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|18348992|gb|BJ181041.1|BJ181041
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208368322|gb|DC955519.1|DC955519
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208358476|gb|DC930608.1|DC930608
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208372711|gb|DC952598.1|DC952598
EST:     ACAAAGCTCAGGCCTCAGCAC-TGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|100366167|gb|BY967313.1|BY967313
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCCTTGGTGGGTCGCAA-CCCAGCAAACACCAATGCCCCTGATCTTG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTC-TTGGTGG-TCGCAAACCCAGCAAACACCAATGCCC-TGATCTTG
EST: gi|208371610|gb|DC952252.1|DC952252
EST:     ACAAAGCTCAGGCCTCAGCAC-TGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208353874|gb|DC914056.1|DC914056
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208390992|gb|DC929311.1|DC929311
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|162275594|gb|FC451622.1|FC451622
EST:     GAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: GAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208385840|gb|DC932784.1|DC932784
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|100403444|gb|BY991205.1|BY991205
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208368561|gb|DC939954.1|DC939954
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|100392776|gb|BY971878.1|BY971878
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|162267902|gb|FC444503.1|FC444503
EST:     TCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: TCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|162267903|gb|FC444504.1|FC444504
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|18328075|gb|BJ160079.1|BJ160079
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208349585|gb|DC922003.1|DC922003
EST:     AGCTCAGGGCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTNTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: AGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208364035|gb|DC939600.1|DC939600
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208375407|gb|DC936978.1|DC936978
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|100447768|gb|CJ972067.1|CJ972067
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208355218|gb|DC929735.1|DC929735
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|67695497|gb|BJ955730.1|BJ955730
EST:     TCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: TCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208388048|gb|DC933154.1|DC933154
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208359727|gb|DC946603.1|DC946603
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208397104|gb|DC908118.1|DC908118
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|162191089|gb|FC367351.1|FC367351
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208377823|gb|DC940935.1|DC940935
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208352189|gb|DC901710.1|DC901710
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208369551|gb|DC932533.1|DC932533
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|162191088|gb|FC367350.1|FC367350
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208372315|gb|DC936459.1|DC936459
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208360065|gb|DC939002.1|DC939002
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208364222|gb|DC947298.1|DC947298
EST:     TCAGGCNTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCNAAACACCAATGCCCTGATCTTGAAGGA
genomic: TCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGC-AAACACCAATGCCCTGATCTTGAAGGA
EST: gi|208361889|gb|DC953939.1|DC953939
EST:     AC-AAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208389897|gb|DC937728.1|DC937728
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|100356242|gb|BY946266.1|BY946266
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|18342886|gb|BJ174922.1|BJ174922
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208359858|gb|DC938935.1|DC938935
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208369597|gb|DC936345.1|DC936345
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208364902|gb|DC947044.1|DC947044
EST:     AGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: AGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208392146|gb|DC957253.1|DC957253
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|162201299|gb|FC376817.1|FC376817
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|208364310|gb|DC935581.1|DC935581
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|162215677|gb|FC391405.1|FC391405
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
EST: gi|67572131|gb|BJ944955.1|BJ944955
EST:     ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAG                         GTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG
genomic: ACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 45

CAAGGAGGGTATGGAGCGCAAGGATGTGATGTCCAAAAATGTTTCCATCTACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttc ... ggttcgacagGTCTTGGTGGTCGCAAACCCAGCAAACACCAATGCCCTGATCTTGAAGGAGTTCGCTCCCTCTATTCCTGAGAAAAACATCACGTGTCTGACCCGGCTTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGGAGGGTATGGAGCGCAAGGATGTGATGTCCAAAAATGTTTCCATCTACAAAGCTCAGGCCTCAGCACTTGAGCAGCACGCTGCAAAAGATGTCAAGgtaggtgttcgtcataaattcataagcgcgatatatgtgactttattttgaatgtaaggctaaattcatgcattcacatatggtcctataattgctgtga

- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG