1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAAGATGTCTCATTCTATCAAGACTTTCAAATCATTGTCTTGGGCTTAGATTCCCTGGAAGCACGCAGCTACATCAACTCTGTAGTCTGTGGATTCTTAGgtcaggctttcttccttaacatcctgtttatgcattgttattttcctcaatagttttgcgtttcaccaagttctgtcgctgtatatctgcttagtgttgc...
species | Physcomitrella patens |
transcript | PP1S235_30V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCCCTGGAAGCACGCAGCTACATCAACTCTGTAGTCTGTGGATTCTTAG AGTATGAAGAAGATGGCTCACCAAACCTGGCCACACTTAAGCCTCTGGTGGEST: gi|18330770|gb|BJ162776.1|BJ162776
genomic: TTCCCTGGAAGCACGCAGCTACATCAACTCTGTAGTCTGTGGATTCTTAGgtcaggcttt ... gaatgtgtagAGTATGAAGAAGATGGCTCACCAAACCTGGCCACACTTAAGCCTCTGGTGG
EST: TTCCCTGGAAGCACGCAGCTACATCAACTCTGTAGTCTGTGGATTCTTAG AGTATGAAGAAGATGGCTCACCAAAEST: gi|100418521|gb|BY957460.1|BY957460
genomic: TTCCCTGGAAGCACGCAGCTACATCAACTCTGTAGTCTGTGGATTCTTAGgtcaggcttt ... gaatgtgtagAGTATGAAGAAGATGGCTCACCAAA
EST: TTCCCTGGAAGCACGCAGCTACATCAACTCTGTAGTCTGTGGATTCTTAG AGTATGAAGAAGATGGCTCACCAAACCTGGCCACACTTAAGCCTCTGGTGG
genomic: TTCCCTGGAAGCACGCAGCTACATCAACTCTGTAGTCTGTGGATTCTTAGgtcaggcttt ... gaatgtgtagAGTATGAAGAAGATGGCTCACCAAACCTGGCCACACTTAAGCCTCTGGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGATGTCTCATTCTATCAAGACTTTCAAATCATTGTCTTGGGCTTAGATTCCCTGGAAGCACGCAGCTACATCAACTCTGTAGTCTGTGGATTCTTAGgtcaggctttcttccttaacatcctgtttatgcattgttattttcctcaatagttttgcgtttcaccaagttctgtcgctgtatatctgcttagtgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT