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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAATCTGGTGCCTCTTCGTGCTTATTACTTTTCCAAAGACGAGAAGCTCTTGGTATATGACTACATGTCTATGGGAAGTCTTTCCGCTCTCCTTCATGgtgagttcttttgacacggtgacatttggacatgtatttcggcacactaagcaagacaccttgtaattgatggatttcttaagatttgtgacatagcttatctgctacatgtttcgcag

Basic information

species Physcomitrella patens
transcript PP1S235_117V6.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S235_117V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA02G40340.1 (Glycine max), 5'ss of exon 2
CGGAATCTGGTGCCTCTTCGTGCTTATTACTTTTCCAAAGACGAGAAGCTCTTGGTATATGACTACATGTCTATGGGAAGTCTTTCCGCTCTCCTTCATGgtgagttcttttgacacggtgacatttggacatgtatttcggcacactaagcaagacaccttgtaattgatggatttcttaagatttgtgacatagcttatctgctacatgtttcgcag
|  ||| | ||||| |||||||||||||| | ||| || ||||||||||||||||| |||||||||||  | |  || | ||| ||  | ||| | ||||||  |   || ||   |    |  ||  |  | || |||             || ||   || |  ||    | | |  ||  ||||| ||     | |||     |   | ||     
CCAAATGTTGTGCCCCTTCGTGCTTATTATTATTCTAAGGACGAGAAGCTCTTGGTTTATGACTACATCCCAAGTGGCAATCTATCTACCCTCTTGCATGgtatgcatttctgtttctcctagtttcagttaagtcttt-------------aaaacttgtttttgttttctgttattctat-atttgagattatacatattatgcatgagctt-----

upper sequence: PP1S235_117V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA14G38630.1 (Glycine max), 5'ss of exon 1
CGGAATCTGGTGCCTCTTCGTGCTTATTACTTTTCCAAAGACGAGAAGCTCTTGGTATATGACTACATGTCTATGGGAAGTCTTTCCGCTCTCCTTCATGgtgagttcttttgacacggtgacatttggacatgtatttcggcacactaagcaagacaccttgtaattgatggatttcttaagatttgtgacatagcttatctgctacatgtttcgcag
|  ||| | ||||| |||||||||||||| | ||| || ||||||||||||||||| |||||||||||  | |  || | ||| ||  | ||| | ||||||  |   || |    |    |  ||  |  | |  |||   ||   |     ||    ||  || |   || ||||   |  |||  ||   |   | ||||                
CCAAATGTTGTGCCCCTTCGTGCTTATTATTATTCTAAGGACGAGAAGCTCTTGGTTTATGACTACATCCCAAGTGGCAATCTATCTACCCTCTTGCATGgtatgcatttctttttctcctagtttcagttaaggcttt--acaacttgttttagttgtctgttattc--tgtatttgagattattcatgttttgcgtgatctt---------------

upper sequence: PP1S235_117V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT3G08680.2 (Arabidopsis thaliana), 5'ss of exon 2
CGGAATCTGGTGCCTCTTCGTGCTTATTACTTTTCCAAAGACGAGAAGCTCTTGGTATATGACTACATGTCTATGGGAAGTCTTTCCGCTCTCCTTCATGgtgagttcttttgacacggtgacatttggacatgtatttcggcacactaagcaagacaccttgtaattgatggatttcttaagatttgtgacatagcttatctgctacatgtttcgcag
  |||| | |  ||||| ||||| ||||||||||| ||||||||||||||  | || ||||| |||        ||| | | | |||   || ||||||||| |  |  | |   ||  ||  | |      | ||    |   |  |||   | |||| ||      |||| |||   |                                       
GTGAATGTAGCTCCTCTCCGTGCCTATTACTTTTCAAAAGACGAGAAGCTACTCGTGTATGATTACTACCAAGGGGGCAATTTCTCCATGCTGCTTCATGgtaatatgatgttttaca-tgttactcaaggttataaaaagtggctttaaagta-acacttta-----gatgaattctatgcag-----------------------------------

upper sequence: PP1S235_117V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv08s0040g00060.t01 (Vitis vinifera), 5'ss of exon 1
CGGAATCTGGTGCCTCTTCGTGCTTATTACTTTTCCAAAGACGAGAAGCTCTTGGTATATGACTACATGTCTATGGGAAGTCTTTCCGCTCTCCTTCATGgtgagttct-tttgacacggtgacatttggacatgta-tttcggcacactaagca-agacaccttgtaattgatggat-ttctta------agatttgtgacatagcttatctgctaca--tgtttcgcag-----------------------------------
|  ||| | ||||||||||||||||| ||||  || || || ||||||||| |||| |||||||||||  |    || ||  | |  || ||  | ||||||  | ||| |   | |   |    |||     |||  ||||    |  | |  | ||| |  | | ||    |  ||  |||||      | ||  |  |  |  ||  ||| | | |    || | ||                                    
CCAAATGTCGTGCCTCTTCGTGCTTACTACTACTCAAAGGATGAGAAGCTCCTGGTTTATGACTACATAACGGGCGGCAGCTTGTTTGCACTATTGCATGgtatgctctatccaatatccttctgtttttttctgttctttcattcccttgaatatagaaatatagaaacacgtaaatgctcttactagctacataagaaaagtgactcttctcccaaaataattcctcattcatcacatctttcttttattctaattgattacag