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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGTATTTTATCATTTGTTTCATGCCGAGCTAGCCCCCCACAATCCCCTTGCCAAAATTCTGTGCATCAAAGGTGTCGTTTTCTTCTCTTTCTGGCAGgtaaagtttctggatccatttaccaactacagagatattgtgtcatttggactagcgtgcactagtttgagttattgttattatgtctgcatctattctgttatggacaagtgcttaatatttaacacccgtctacttttcattttccag

Basic information

species Physcomitrella patens
transcript PP1S233_35V6.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S233_35V6.2 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G025242_T02 (Zea mays), 5'ss of exon 4
TGTTGTATTTTATCATTTGTTTCATGCCGAGCTAGCCCCCCACAATCCCCTTGCCAAAATTCTGTGCATCAAAGGTGTCGTTTTCTTCTCTTTCTGGCAGgtaaagtttctggatccatttaccaactacagagatattgtgtcatttggactagcgtgcactagtttgagttattgttattatgtctgcatctattctgttatggacaagtgcttaatatttaacacccgtctacttttcattttccag
||| | || || || |||||| | ||||| || || ||||| || ||||| || | ||||||||||||| | || ||||||||||||||||||||| | | || | | || | | || || || || || | || || | |||| | | | || | | ||||| || |
GGTTCTCTTCTACCACTTGTTTGCTAAAGAGCTGGCACCTCACAAGCCTCTTGCAAAGTTCTTGTGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGgtatacatatcatctcgacctg--aatggccgtttggttccttc--ttcagcttttctgaa--agctttatttat-ataactttgcacgagtg-attctcttgatttc------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208364184|gb|DC947288.1|DC947288
EST:     TTGCCAAAATTCTGTGCATCAAAGGTGTCGTTTTCTTCTCTTTCTGGCAG                         GGAGTGGCATTGCAGTTGCTAGCAGCAGCAGGTATAATTCGGGCCGAGCAC
genomic: TTGCCAAAATTCTGTGCATCAAAGGTGTCGTTTTCTTCTCTTTCTGGCAGgtaaagtttc ... cattttccagGGAGTGGCATTGCAGTTGCTAGCAGCAGCAGGTATAATTCGGGCCGAGCAC
EST: gi|208350127|gb|DC926096.1|DC926096
EST:     TTGCCAAAATTCTGTGCATCAAAGGTGTCGTTTTCTTCTCTTTCTGGCAG                         GGAGTGGCATTGCAGTTGCTAGCAGCAGCAGGTATAATTCGGGCCGAGCAC
genomic: TTGCCAAAATTCTGTGCATCAAAGGTGTCGTTTTCTTCTCTTTCTGGCAGgtaaagtttc ... cattttccagGGAGTGGCATTGCAGTTGCTAGCAGCAGCAGGTATAATTCGGGCCGAGCAC
EST: gi|67695100|gb|BJ955333.1|BJ955333
EST:     TTGCCAAAATTCTGTGCATCAAAGGTGTCGTTTTCTTCTCTTTCTGGCAG                         GGAGTGGCATTGCAGTTGCTAGCAGCAGCAGGTATAATTCGGGCCGAGCAC
genomic: TTGCCAAAATTCTGTGCATCAAAGGTGTCGTTTTCTTCTCTTTCTGGCAGgtaaagtttc ... cattttccagGGAGTGGCATTGCAGTTGCTAGCAGCAGCAGGTATAATTCGGGCCGAGCAC
EST: gi|208373310|gb|DC948584.1|DC948584
EST:     TTGCCAAAATTCTGTGCATCAAAGGTGTCGTTTTCTTCTCTTTCTGGCAG                         GGAGTGGCATTGCAGTTGCTAGCAGCAGCAGGTATAATTCGGGCCGAGCAC
genomic: TTGCCAAAATTCTGTGCATCAAAGGTGTCGTTTTCTTCTCTTTCTGGCAGgtaaagtttc ... cattttccagGGAGTGGCATTGCAGTTGCTAGCAGCAGCAGGTATAATTCGGGCCGAGCAC