1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAACGATGGTTTCGTCTTAGTAGCTGATCTTTTAAAACTAAGCAAGAATACTGCAGCTGGTATTCCATTAAGTTCTCACAGCGTGGAAGATGTGCGCAAGgtgtctttcttcttcactcgcgtgcacgctcatgtgaagtgctgtgttccatgcttctacagctgtagtgatccatggcttgcaaattgttgcgttacacagtagtaactgtgcttgactacaaccatgggttgttcag
species | Physcomitrella patens |
transcript | PP1S213_28V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGCAGCTGGTATTCCATTAAGTTCTCACAGCGTGGAAGATGTGCGCAAG GCTGTTGCAAGGGATGGGAAACGACGTTTTGGACTAAAAGAAGAGGATGGGEST: gi|22492595|gb|BU052518.1|BU052518
genomic: CTGCAGCTGGTATTCCATTAAGTTCTCACAGCGTGGAAGATGTGCGCAAGgtgtctttct ... ggttgttcagGCTGTTGCAAGGGATGGGAAACGACGTTTTGGACTAAAAGAAGAGGATGGG
EST: CTGCAGCTGGTATTCCATTAAGTTCTCACAGCGTGGAAGATGTGCGCAAG GCTGTTGCAAGGGATGGGAAACGACGTTTTGGACTAAAAGAAGAGGATGGGEST: gi|208399295|gb|DC912482.1|DC912482
genomic: CTGCAGCTGGTATTCCATTAAGTTCTCACAGCGTGGAAGATGTGCGCAAGgtgtctttct ... ggttgttcagGCTGTTGCAAGGGATGGGAAACGACGTTTTGGACTAAAAGAAGAGGATGGG
EST: CTGCAGCTGGTATTCCATTAAGTTCTCACAGCGTGNAAGATGTGCGCAAG GCTGTTGCAAGGNATGGGAAACGACGTTTTGNACTAAAAGAAGANGATGGG
genomic: CTGCAGCTGGTATTCCATTAAGTTCTCACAGCGTGGAAGATGTGCGCAAGgtgtctttct ... ggttgttcagGCTGTTGCAAGGGATGGGAAACGACGTTTTGGACTAAAAGAAGAGGATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACGATGGTTTCGTCTTAGTAGCTGATCTTTTAAAACTAAGCAAGAATACTGCAGCTGGTATTCCATTAAGTTCTCACAGCGTGGAAGATGTGCGCAAGgtgtctttcttcttcactcgcgtgcacgctcatgtgaagtgctgtgttccatgcttctacagctgtagtgatccatggcttgcaaattgttgcgttacacagtagtaactgtgcttgactacaaccatgggttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG