1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaaaatcttgttatttgtaaccttttgttctgtaattcgtatacctagttttgattcatattgtttgaggaaattcacattaatcaagctgtc...
species | Physcomitrella patens |
transcript | PP1S209_135V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG GGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAGCAACAGCATEST: gi|18350329|gb|BJ182380.1|BJ182380
genomic: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaa ... atatgcgcagGGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAGCAACAGCAT
EST: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG GGTATGTTTATACCTGCAATCAAGGGCCEST: gi|162185219|gb|FC361729.1|FC361729
genomic: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaa ... atatgcgcagGGTATGTTTATACCTGCAATCAAGGGCC
EST: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG GGTATGTTTATACCTGCAATCAAAGGCCAAGGTACCGAAGAGCAACAGCATEST: gi|100360816|gb|BY965915.1|BY965915
genomic: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaa ... atatgcgcagGGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAGCAACAGCAT
EST: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG GGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAGGCA-CAGCAEST: gi|162194102|gb|FC370277.1|FC370277
genomic: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaa ... atatgcgcagGGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAG-CAACAGCA
EST: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG GGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAGCAACAGCATEST: gi|18360367|gb|BJ192429.1|BJ192429
genomic: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaa ... atatgcgcagGGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAGCAACAGCAT
EST: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG GGGTATGTTTATACCTGCAATCEST: gi|18363051|gb|BJ195123.1|BJ195123
genomic: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaa ... atatgcgcagGG-TATGTTTATACCTGCAATC
EST: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG GGGTATGTTTATACCTGCAAEST: gi|208368222|gb|DC931448.1|DC931448
genomic: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaa ... atatgcgcagGG-TATGTTTATACCTGCAA
EST: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG GGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAGCAACAGCATEST: gi|67508066|gb|BJ940937.1|BJ940937
genomic: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaa ... atatgcgcagGGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAGCAACAGCAT
EST: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG GGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAGCAACAGCATEST: gi|208353659|gb|DC929702.1|DC929702
genomic: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaa ... atatgcgcagGGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAGCAACAGCAT
EST: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG GGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAGCAACAGCATEST: gi|18361973|gb|BJ194040.1|BJ194040
genomic: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaa ... atatgcgcagGGTATGTTTATACCTGCAATCAAGGGCCAGGGTACCGAAGAGCAACAGCAT
EST: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG GGGTATGTTTATACCTGCAAEST: gi|18329732|gb|BJ161738.1|BJ161738
genomic: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaa ... atatgcgcagGG-TATGTTTATACCTGCAA
EST: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG GGGTATGTTTATACCTGCAATCAA
genomic: TGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaa ... atatgcgcagGG-TATGTTTATACCTGCAATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGGgtaaatttaaaatcttgttatttgtaaccttttgttctgtaattcgtatacctagttttgattcatattgtttgaggaaattcacattaatcaagctgtc
- - - - - - TGAAGC