1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCTACAGCTCCTCTTACCCCTAAGCCCATGGAGAACGCCAAGACTGTGGTTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtccacaagattgtagtgatgcagaatcattttgcgtggattgcatttggtcgcacagaagatgtggttcctgacaggacgctttggattgacaacag
species | Physcomitrella patens |
transcript | PP1S205_59V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA GGAAGNTCAGACNAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATTEST: gi|162165614|gb|FC341453.1|FC341453
genomic: GTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: ATGAAGAAGGTCGAGTGCAA GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATTEST: gi|208376776|gb|DC918731.1|DC918731
genomic: ATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATTEST: gi|162200281|gb|FC376322.1|FC376322
genomic: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: GTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATTEST: gi|162200282|gb|FC376323.1|FC376323
genomic: GTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATTEST: gi|67693124|gb|BJ953357.1|BJ953357
genomic: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATTEST: gi|162165615|gb|FC341454.1|FC341454
genomic: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATTEST: gi|162181475|gb|FC358089.1|FC358089
genomic: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATTEST: gi|162168296|gb|FC344610.1|FC344610
genomic: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATTEST: gi|208394748|gb|DC924079.1|DC924079
genomic: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: GTCGAGTGCAA GGAAGNTCAGACCAATCCGTACTCTTTGATGTAGGAAAACTGCCAGCGATT
genomic: GTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTACAGCTCCTCTTACCCCTAAGCCCATGGAGAACGCCAAGACTGTGGTTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtccacaagattgtagtgatgcagaatcattttgcgtggattgcatttggtcgcacagaagatgtggttcctgacaggacgctttggattgacaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG